Pairwise Alignments
Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 166 a.a., NapF ferredoxin component of periplasmic nitrate reductase from Sinorhizobium meliloti 1021
Score = 58.5 bits (140), Expect = 1e-13
Identities = 40/145 (27%), Positives = 57/145 (39%), Gaps = 28/145 (19%)
Query: 30 KVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNL------ 83
+ C CG C + CP + + + + +F +C CG+C ++CP +
Sbjct: 35 EACTGCGRCADACPTHIIRVIDDR------PALDFFIAECTFCGQCAELCPEPVFTGRSQ 88
Query: 84 ------KIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVG 137
I L C C DACP + P LP+ E C G
Sbjct: 89 QFPHVAMIGESCLARNRTDCQACRDACPTEAIRFR----PRAGGPFLPE---LNEELCTG 141
Query: 138 CGVCISECPVGALSI---EGEKAVV 159
CG C+S CPV A+ I E E+A V
Sbjct: 142 CGACLSVCPVAAIGIREVEWERAHV 166
Score = 57.0 bits (136), Expect = 4e-13
Identities = 34/127 (26%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 133 EDCVGCGVCISECPVGALSIEGEKAVVD--KDSCIYCSICAQTCPWNAIFVAGKKSPKRD 190
E C GCG C CP + + ++ +D C +C CA+ CP +F R
Sbjct: 35 EACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCP-EPVFTG------RS 87
Query: 191 KNIVKFSVDSDLCIG-----CGDCTDKCPRDLIVLNEMVAVP------PKGCPACGLCKA 239
+ ++ + C+ C C D CP + I P + C CG C +
Sbjct: 88 QQFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLS 147
Query: 240 ACPVDAI 246
CPV AI
Sbjct: 148 VCPVAAI 154
Score = 57.0 bits (136), Expect = 4e-13
Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 14/130 (10%)
Query: 229 KGCPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVV 288
+ C CG C ACP I ++ + +P D I +C +CG CA CP T
Sbjct: 35 EACTGCGRCADACPTHIIRVIDD----RPALDFFIA----ECTFCGQCAELCPEPVFT-- 84
Query: 289 NPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCD 348
+ + P ++ + C AC +CP +A+R G + E + LC
Sbjct: 85 -GRSQQFPHVAMIGESCLARNRTDCQACRDACPTEAIRFRP--RAGGPFLP-ELNEELCT 140
Query: 349 SCGKCIETCP 358
CG C+ CP
Sbjct: 141 GCGACLSVCP 150
Score = 49.7 bits (117), Expect = 6e-11
Identities = 36/138 (26%), Positives = 55/138 (39%), Gaps = 23/138 (16%)
Query: 94 CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153
C GC +C DACP + V++ P + E C CG C CP +
Sbjct: 37 CTGCGRCADACPTHIIR---VIDDR------PALDFFIAE-CTFCGQCAELCPEPVFTGR 86
Query: 154 GEK---AVVDKDSCIY-----CSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIG 205
++ + +SC+ C C CP AI + P+ + ++ +LC G
Sbjct: 87 SQQFPHVAMIGESCLARNRTDCQACRDACPTEAI----RFRPRAGGPFLP-ELNEELCTG 141
Query: 206 CGDCTDKCPRDLIVLNEM 223
CG C CP I + E+
Sbjct: 142 CGACLSVCPVAAIGIREV 159
Score = 47.8 bits (112), Expect = 2e-10
Identities = 43/154 (27%), Positives = 63/154 (40%), Gaps = 40/154 (25%)
Query: 201 DLCIGCGDCTDKCPRDLI-VLNEMVAVP--PKGCPACGLCKAACPVDA----------IE 247
+ C GCG C D CP +I V+++ A+ C CG C CP +
Sbjct: 35 EACTGCGRCADACPTHIIRVIDDRPALDFFIAECTFCGQCAELCPEPVFTGRSQQFPHVA 94
Query: 248 LVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPK--GLEMPSRKKTEKAN 305
++ E + TD C C CP AI P+ G +P + N
Sbjct: 95 MIGESCLARNRTD------------CQACRDACPTEAIR-FRPRAGGPFLP------ELN 135
Query: 306 EFKMCIRCGACVQSCPNDALRIGKIIHNGKEYER 339
E ++C CGAC+ CP A+ I ++ E+ER
Sbjct: 136 E-ELCTGCGACLSVCPVAAIGIREV-----EWER 163
Score = 47.8 bits (112), Expect = 2e-10
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 11/53 (20%)
Query: 12 CKACENSCPTEALKLNP-----------FKVCQLCGNCVNVCPNDALNLREIE 53
C+AC ++CPTEA++ P ++C CG C++VCP A+ +RE+E
Sbjct: 108 CQACRDACPTEAIRFRPRAGGPFLPELNEELCTGCGACLSVCPVAAIGIREVE 160
Score = 38.1 bits (87), Expect = 2e-07
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 304 ANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLK 363
A + C CG C +CP +R+ + ++F C CG+C E CP +
Sbjct: 31 AEGLEACTGCGRCADACPTHIIRV------IDDRPALDFFIAECTFCGQCAELCPEPV-- 82
Query: 364 LTGKSEK 370
TG+S++
Sbjct: 83 FTGRSQQ 89
Score = 23.9 bits (50), Expect = 0.003
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 3 KINTEDCYMCKACENSCPTEAL 24
++N E C C AC + CP A+
Sbjct: 133 ELNEELCTGCGACLSVCPVAAI 154