Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 162 a.a., NADH-quinone oxidoreductase, chain I (NCBI) from Rhodospirillum rubrum S1H

 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 19/59 (32%), Positives = 29/59 (49%)

Query: 161 KDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIV 219
           ++ CI C +C   CP  AI +  +      +   ++ +D   CI CG C + CP D IV
Sbjct: 60  EERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIV 118



 Score = 45.8 bits (107), Expect = 8e-10
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 133 EDCVGCGVCISECPVGALSIEGEKAV----------VDKDSCIYCSICAQTCPWNAI 179
           E C+ C +C + CP  A++IE E             +D   CIYC  C + CP +AI
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 43.9 bits (102), Expect = 3e-09
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 267 EEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDAL 325
           EE+C  C  C   CP  AIT+      +  SR+ T    +   CI CG C ++CP DA+
Sbjct: 60  EERCIACKLCEAICPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 43.1 bits (100), Expect = 5e-09
 Identities = 22/55 (40%), Positives = 26/55 (47%)

Query: 231 CPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAI 285
           C AC LC+A CP  AI +  E  +           D  KC YCG C   CP +AI
Sbjct: 63  CIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 35.0 bits (79), Expect = 1e-06
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 304 ANEFKMCIRCGACVQSCPNDALRIGKI--IHNGKEYERIEFSPNLCDSCGKCIETCPYDM 361
           AN  + CI C  C   CP  A+ I         +   R +     C  CG C E CP D 
Sbjct: 57  ANGEERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDA 116

Query: 362 L 362
           +
Sbjct: 117 I 117



 Score = 33.9 bits (76), Expect = 3e-06
 Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 16/57 (28%)

Query: 7   EDCYMCKACENSCPTEALKLN----------------PFKVCQLCGNCVNVCPNDAL 47
           E C  CK CE  CP +A+ +                     C  CG C   CP DA+
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAI 117



 Score = 33.1 bits (74), Expect = 6e-06
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEP---AKRNITLPKEPIAVTEDCVGCGVCISECPVGAL 150
           C+ C  C   CP   + +E   EP     R  T  +  I +T+ C+ CG C   CPV A+
Sbjct: 63  CIACKLCEAICPAQAITIE--AEPRTDGSRRTT--RYDIDMTK-CIYCGFCEEACPVDAI 117

Query: 151 SIEG---EKAVVDKDSCIY 166
            +EG   E A   ++  +Y
Sbjct: 118 -VEGPNFEFAAETREELLY 135



 Score = 30.8 bits (68), Expect = 3e-05
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 32  CQLCGNCVNVCPNDALNLREIELNGKTIKQIAYF--PTKCDLCGECVKVCPNNLKIE 86
           C  C  C  +CP  A+ +        + +   Y    TKC  CG C + CP +  +E
Sbjct: 63  CIACKLCEAICPAQAITIEAEPRTDGSRRTTRYDIDMTKCIYCGFCEEACPVDAIVE 119



 Score = 25.8 bits (55), Expect = 9e-04
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 4   INTEDCYMCKACENSCPTEALKLNP 28
           I+   C  C  CE +CP +A+   P
Sbjct: 97  IDMTKCIYCGFCEEACPVDAIVEGP 121