Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 176 a.a., 4Fe-4S ferredoxin, iron-sulfur binding (NCBI) from Rhodospirillum rubrum S1H

 Score = 57.4 bits (137), Expect = 3e-13
 Identities = 43/164 (26%), Positives = 67/164 (40%), Gaps = 27/164 (16%)

Query: 220 LNEMVAVPPKGCPACGLCKAACPV-------DAIELVVEYASPK-PITDEGIVWDEEKCA 271
           +N+ V   PK C  C  C+ AC V        A  +  E  SP+  +     V    +C 
Sbjct: 1   MNKFVIADPKKCIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCH 60

Query: 272 YC--GPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIGK 329
           +C   PC   CPN AI   +           + + N+ + C+ C  CV +CP  A+++ K
Sbjct: 61  HCDDAPCLNACPNGAIVYSHD----------SVQVNQAR-CMGCKNCVMACPFGAMQVVK 109

Query: 330 IIHNGKEYERIEFSPNLCDSC------GKCIETCPYDMLKLTGK 367
              +G + +      + CD C        CI+ CP   L L  +
Sbjct: 110 ASAHGNDGDSRRVEAHKCDLCIERAAGPACIDACPTKSLHLVDR 153



 Score = 48.1 bits (113), Expect = 2e-10
 Identities = 34/133 (25%), Positives = 52/133 (39%), Gaps = 12/133 (9%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTE------DCVGC--GVCISEC 145
           C+GC  C  AC  ++   +G           P+  +  T        C  C    C++ C
Sbjct: 12  CIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHHCDDAPCLNAC 71

Query: 146 PVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDS-DLCI 204
           P GA+    +   V++  C+ C  C   CP+ A+ V    +   D +  +      DLCI
Sbjct: 72  PNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGDSRRVEAHKCDLCI 131

Query: 205 --GCGD-CTDKCP 214
               G  C D CP
Sbjct: 132 ERAAGPACIDACP 144



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 33/147 (22%), Positives = 59/147 (40%), Gaps = 31/147 (21%)

Query: 263 IVWDEEKCAYCGPCAIKCP---NNAITVVNPKGLEMPSRK----KTEKANEFKMCIRC-- 313
           ++ D +KC  C  C + C    +N     N    E  S +    KT        C  C  
Sbjct: 5   VIADPKKCIGCRTCEVACVVAHSNGKGGANSMSEESFSPRLRVIKTATVTTPIQCHHCDD 64

Query: 314 GACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLT-------- 365
             C+ +CPN     G I+++   ++ ++ +   C  C  C+  CP+  +++         
Sbjct: 65  APCLNACPN-----GAIVYS---HDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGND 116

Query: 366 GKSEKPLEGFCVMCLK------CIEAC 386
           G S +     C +C++      CI+AC
Sbjct: 117 GDSRRVEAHKCDLCIERAAGPACIDAC 143



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 14/86 (16%)

Query: 9   CYMCK--ACENSCPTEALKLNPFKV------CQLCGNCVNVCPNDALNLREIELNGKTIK 60
           C+ C    C N+CP  A+  +   V      C  C NCV  CP  A+ + +   +G    
Sbjct: 59  CHHCDDAPCLNACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGD 118

Query: 61  QIAYFPTKCDLCGE------CVKVCP 80
                  KCDLC E      C+  CP
Sbjct: 119 SRRVEAHKCDLCIERAAGPACIDACP 144



 Score = 40.0 bits (92), Expect = 5e-08
 Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 34/186 (18%)

Query: 129 IAVTEDCVGCGVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPK 188
           IA  + C+GC  C   C V   + +G    + ++S                      SP 
Sbjct: 6   IADPKKCIGCRTCEVACVVAHSNGKGGANSMSEESF---------------------SP- 43

Query: 189 RDKNIVKFSVDSDL-CIGCGD--CTDKCPRDLIVL-NEMVAVPPKGCPACGLCKAACPVD 244
           R + I   +V + + C  C D  C + CP   IV  ++ V V    C  C  C  ACP  
Sbjct: 44  RLRVIKTATVTTPIQCHHCDDAPCLNACPNGAIVYSHDSVQVNQARCMGCKNCVMACPFG 103

Query: 245 AIELVVEYASPKPITDEGIVWDEEKCAYC-----GP-CAIKCPNNAITVVNPKGLEMPSR 298
           A+++V   A         +  +  KC  C     GP C   CP  ++ +V+ + ++   R
Sbjct: 104 AMQVVKASAHGNDGDSRRV--EAHKCDLCIERAAGPACIDACPTKSLHLVDRERVQEVLR 161

Query: 299 KKTEKA 304
           K+  +A
Sbjct: 162 KRQLQA 167



 Score = 28.1 bits (61), Expect = 2e-04
 Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 20/72 (27%)

Query: 2   IKINTEDCYMCKACENSCPTEALKLNPFKV--------------CQLC------GNCVNV 41
           +++N   C  CK C  +CP  A+++                   C LC        C++ 
Sbjct: 83  VQVNQARCMGCKNCVMACPFGAMQVVKASAHGNDGDSRRVEAHKCDLCIERAAGPACIDA 142

Query: 42  CPNDALNLREIE 53
           CP  +L+L + E
Sbjct: 143 CPTKSLHLVDRE 154