Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 243 a.a., quinol dehydrogenase periplasmic component (RefSeq) from Shewanella loihica PV-4

 Score = 50.1 bits (118), Expect = 7e-11
 Identities = 53/198 (26%), Positives = 70/198 (35%), Gaps = 53/198 (26%)

Query: 20  PTEALKLNPF-KVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKV 78
           P  AL    F   C  CG CV  CP D L L        T     YF  +   C  C  +
Sbjct: 53  PPGALDEQDFLSACVRCGLCVQACPYDTLKLARWFEGAPT--GTPYFTARTVPCEMCEDI 110

Query: 79  CPNNLKIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGC 138
                                CV ACP       G ++ A  NI   K  IAV  D   C
Sbjct: 111 --------------------PCVKACP------SGSLDHALTNIDEAKMGIAVLIDEKNC 144

Query: 139 GVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPW--NAIFVAGKKSPKRDKNIVKF 196
                      L+ +G          + C +C + CP   NAI +  + + + D + +  
Sbjct: 145 -----------LNFKG----------LRCDVCYRICPLIDNAITLERQHNQRSDHHAMFL 183

Query: 197 -SVDSDLCIGCGDCTDKC 213
            +V+SD C GCG C   C
Sbjct: 184 PTVNSDTCTGCGKCEHAC 201



 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 15/139 (10%)

Query: 231 CPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCG--PCAIKCP----NNA 284
           C  CGLC  ACP D ++L   +    P            C  C   PC   CP    ++A
Sbjct: 66  CVRCGLCVQACPYDTLKL-ARWFEGAPTGTPYFTARTVPCEMCEDIPCVKACPSGSLDHA 124

Query: 285 ITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCP--NDALRIGKIIHNGKEYERIEF 342
           +T ++   + +      +    FK  +RC  C + CP  ++A+ + +  HN +      F
Sbjct: 125 LTNIDEAKMGIAVLIDEKNCLNFK-GLRCDVCYRICPLIDNAITLER-QHNQRSDHHAMF 182

Query: 343 SPNL----CDSCGKCIETC 357
            P +    C  CGKC   C
Sbjct: 183 LPTVNSDTCTGCGKCEHAC 201



 Score = 40.0 bits (92), Expect = 7e-08
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 52/177 (29%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRN---ITLPKEPIAVTEDCVGCGVCISECPVGAL 150
           CV C  CV ACP   + +    E A       T    P  + ED      C+  CP G+L
Sbjct: 66  CVRCGLCVQACPYDTLKLARWFEGAPTGTPYFTARTVPCEMCEDIP----CVKACPSGSL 121

Query: 151 SIE---------GEKAVVDKDSCIY-----CSICAQTCPW--NAIFVAGKKSPKRDKNIV 194
                       G   ++D+ +C+      C +C + CP   NAI +  + + + D + +
Sbjct: 122 DHALTNIDEAKMGIAVLIDEKNCLNFKGLRCDVCYRICPLIDNAITLERQHNQRSDHHAM 181

Query: 195 KF-SVDSDLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCKAACPVDAIELVV 250
              +V+SD C GCG                             C+ AC ++   + V
Sbjct: 182 FLPTVNSDTCTGCGK----------------------------CEHACVLEEAAIKV 210



 Score = 39.7 bits (91), Expect = 9e-08
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 310 CIRCGACVQSCPNDALRIGKIIH---NGKEYERIEFSPNLCDSCG--KCIETCP 358
           C+RCG CVQ+CP D L++ +       G  Y      P  C+ C    C++ CP
Sbjct: 66  CVRCGLCVQACPYDTLKLARWFEGAPTGTPYFTARTVP--CEMCEDIPCVKACP 117



 Score = 36.6 bits (83), Expect = 8e-07
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 11/51 (21%)

Query: 347 CDSCGKCIETCPYDMLKLTGKSEKPLEGF---------CVMC--LKCIEAC 386
           C  CG C++ CPYD LKL    E    G          C MC  + C++AC
Sbjct: 66  CVRCGLCVQACPYDTLKLARWFEGAPTGTPYFTARTVPCEMCEDIPCVKAC 116



 Score = 35.8 bits (81), Expect = 1e-06
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 40/136 (29%)

Query: 9   CYMCKACENSCPTEALKL----------NPFKV-----CQLCGN--CVNVCPNDAL---- 47
           C  C  C  +CP + LKL           P+       C++C +  CV  CP+ +L    
Sbjct: 66  CVRCGLCVQACPYDTLKLARWFEGAPTGTPYFTARTVPCEMCEDIPCVKACPSGSLDHAL 125

Query: 48  -NLREIELNGKTI----KQIAYFPTKCDLCGECVKVCPNNLKIENDKLK----------- 91
            N+ E ++    +      + +   +CD+C     +  N + +E    +           
Sbjct: 126 TNIDEAKMGIAVLIDEKNCLNFKGLRCDVCYRICPLIDNAITLERQHNQRSDHHAMFLPT 185

Query: 92  ---GFCVGCMKCVDAC 104
                C GC KC  AC
Sbjct: 186 VNSDTCTGCGKCEHAC 201



 Score = 24.3 bits (51), Expect = 0.004
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 4   INTEDCYMCKACENSCPTE--ALKLNP 28
           +N++ C  C  CE++C  E  A+K+ P
Sbjct: 186 VNSDTCTGCGKCEHACVLEEAAIKVLP 212