Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 158 a.a., ferredoxin-type protein NapF (RefSeq) from Shewanella loihica PV-4

 Score = 60.1 bits (144), Expect = 4e-14
 Identities = 32/129 (24%), Positives = 50/129 (38%), Gaps = 25/129 (19%)

Query: 31  VCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNNL------- 83
           +C  C  C++ C    L+  +         ++++   +C  CG C KVCP  L       
Sbjct: 35  ICTRCDKCIDACETKILSRGD-----GGFPEVSFSQDECTFCGACAKVCPEPLFTDTEET 89

Query: 84  ------KIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVG 137
                  I+   L    + C  C DAC    +     +  A +       P+  TE C G
Sbjct: 90  PWQIKASIDQSCLANSGIWCQTCKDACDPRAISFTASIGQAPK-------PVIDTEMCNG 142

Query: 138 CGVCISECP 146
           CG C++ CP
Sbjct: 143 CGACVAPCP 151



 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 39/135 (28%), Positives = 47/135 (34%), Gaps = 24/135 (17%)

Query: 162 DSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLN 221
           D C  C  C   C    +        + D    + S   D C  CG C   CP  L    
Sbjct: 34  DICTRCDKCIDACETKIL-------SRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDT 86

Query: 222 E-----MVAVPPKGCPA-----CGLCKAACPVDAIELVVEYA-SPKPITDEGIVWDEEKC 270
           E     + A   + C A     C  CK AC   AI        +PKP+       D E C
Sbjct: 87  EETPWQIKASIDQSCLANSGIWCQTCKDACDPRAISFTASIGQAPKPVI------DTEMC 140

Query: 271 AYCGPCAIKCPNNAI 285
             CG C   CPN +I
Sbjct: 141 NGCGACVAPCPNQSI 155



 Score = 52.0 bits (123), Expect = 1e-11
 Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 27/139 (19%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153
           C  C KC+DAC    +       P         E     ++C  CG C   CP    +  
Sbjct: 36  CTRCDKCIDACETKILSRGDGGFP---------EVSFSQDECTFCGACAKVCPEPLFTDT 86

Query: 154 GE-----KAVVDK----DSCIYCSICAQTCPWNAIFVAGK--KSPKRDKNIVKFSVDSDL 202
            E     KA +D+    +S I+C  C   C   AI       ++PK         +D+++
Sbjct: 87  EETPWQIKASIDQSCLANSGIWCQTCKDACDPRAISFTASIGQAPKP-------VIDTEM 139

Query: 203 CIGCGDCTDKCPRDLIVLN 221
           C GCG C   CP   I L+
Sbjct: 140 CNGCGACVAPCPNQSIKLS 158



 Score = 46.6 bits (109), Expect = 5e-10
 Identities = 32/133 (24%), Positives = 51/133 (38%), Gaps = 13/133 (9%)

Query: 200 SDLCIGCGDCTDKCPRDLIVLNE----MVAVPPKGCPACGLCKAACPVDAIELVVEYA-S 254
           +D+C  C  C D C   ++   +     V+     C  CG C   CP        E    
Sbjct: 33  TDICTRCDKCIDACETKILSRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDTEETPWQ 92

Query: 255 PKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCG 314
            K   D+  + +     +C  C   C   AI+     G      +  +   + +MC  CG
Sbjct: 93  IKASIDQSCLANSG--IWCQTCKDACDPRAISFTASIG------QAPKPVIDTEMCNGCG 144

Query: 315 ACVQSCPNDALRI 327
           ACV  CPN ++++
Sbjct: 145 ACVAPCPNQSIKL 157



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 15/108 (13%)

Query: 263 IVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIR-----CGACV 317
           + + +++C +CG CA  CP    T       ++       KA+  + C+      C  C 
Sbjct: 61  VSFSQDECTFCGACAKVCPEPLFTDTEETPWQI-------KASIDQSCLANSGIWCQTCK 113

Query: 318 QSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLT 365
            +C   A+     I       +      +C+ CG C+  CP   +KL+
Sbjct: 114 DACDPRAISFTASIGQAP---KPVIDTEMCNGCGACVAPCPNQSIKLS 158



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 16/89 (17%)

Query: 309 MCIRCGACVQSCPNDALRIGKIIHNGKE-YERIEFSPNLCDSCGKCIETCPYDMLKLTGK 367
           +C RC  C+ +C        KI+  G   +  + FS + C  CG C + CP  +   T +
Sbjct: 35  ICTRCDKCIDACET------KILSRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDTEE 88

Query: 368 S---------EKPLEGFCVMCLKCIEACD 387
           +         +  L    + C  C +ACD
Sbjct: 89  TPWQIKASIDQSCLANSGIWCQTCKDACD 117



 Score = 30.8 bits (68), Expect = 3e-05
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 11/49 (22%)

Query: 12  CKACENSCPTEALKLNPF-----------KVCQLCGNCVNVCPNDALNL 49
           C+ C+++C   A+                ++C  CG CV  CPN ++ L
Sbjct: 109 CQTCKDACDPRAISFTASIGQAPKPVIDTEMCNGCGACVAPCPNQSIKL 157



 Score = 29.3 bits (64), Expect = 8e-05
 Identities = 28/121 (23%), Positives = 36/121 (29%), Gaps = 46/121 (38%)

Query: 6   TEDCYMCKACENSCPTEALKLNPFKV---------CQLCGNCVNVCPN------------ 44
           T+ C  C  C ++C T+ L                C  CG C  VCP             
Sbjct: 33  TDICTRCDKCIDACETKILSRGDGGFPEVSFSQDECTFCGACAKVCPEPLFTDTEETPWQ 92

Query: 45  ---------------------DALNLREIELN---GKTIKQIAYFPTKCDLCGECVKVCP 80
                                DA + R I      G+  K +      C+ CG CV  CP
Sbjct: 93  IKASIDQSCLANSGIWCQTCKDACDPRAISFTASIGQAPKPVID-TEMCNGCGACVAPCP 151

Query: 81  N 81
           N
Sbjct: 152 N 152



 Score = 28.5 bits (62), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 6/51 (11%)

Query: 340 IEFSPNLCDSCGKCIETCPYDMLKLTGKSEKPLEGF----CVMCLKCIEAC 386
           +EF+ ++C  C KCI+ C   +L   G    P   F    C  C  C + C
Sbjct: 30  VEFT-DICTRCDKCIDACETKILS-RGDGGFPEVSFSQDECTFCGACAKVC 78



 Score = 28.5 bits (62), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 4   INTEDCYMCKACENSCPTEALKLN 27
           I+TE C  C AC   CP +++KL+
Sbjct: 135 IDTEMCNGCGACVAPCPNQSIKLS 158