Pairwise Alignments
Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 137 bits (346), Expect = 4e-37
Identities = 93/326 (28%), Positives = 143/326 (43%), Gaps = 68/326 (20%)
Query: 9 CYMCKACENSCPTEALKLNPF----------------KVCQLCGNCVNVCPNDALNLREI 52
C C C CPT A+++ P + C LCG C CP DA+ L
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACPFDAVKL--- 88
Query: 53 ELNGKTIKQIAYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVDACPDSYVGME 112
+N K I ++ +P +++ K CV C +C CP + +E
Sbjct: 89 SINDKPITEMPQYPK-----------IKRGIELNQSK----CVLCEQCELVCPQCAIDVE 133
Query: 113 GVVEPAKRNITLPKEPIAVTEDCVGCGVCISECP----------VGALSIEGEKAV-VDK 161
V P ++++ L + I +DCV CG+C CP + ALS+ + +D
Sbjct: 134 REV-PERKSLVLGEITIK-KDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDL 191
Query: 162 DSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVK----------FSVDSDLCIGCGDCTD 211
D+C+YC +C + CP NAI K P K I K ++D DLC+ CG C +
Sbjct: 192 DACVYCKVCEKACPHNAIEAICYKCPLASK-IKKPELYGEIKGQTNIDKDLCVSCGWCAN 250
Query: 212 KCPRDLIVLNEM----VAVPPKGCPACGLCKAACPVDAIELVVEYASPKPITDE--GIVW 265
CP D I + + + + C ACG C + CP +A+ + P+ D+ +V
Sbjct: 251 ICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALV----FPQPEKQGDKVPNVVV 306
Query: 266 DEEKCAYCGPCAIKCPNNAITVVNPK 291
+++ C CG C CP +A+TV K
Sbjct: 307 NQDVCILCGACTHSCPVDALTVKRTK 332
Score = 126 bits (317), Expect = 8e-34
Identities = 88/306 (28%), Positives = 133/306 (43%), Gaps = 48/306 (15%)
Query: 94 CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153
CVGC C + CP S + M + K +I PK + ++E CV CG+C CP A+ +
Sbjct: 32 CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPK--LDISEKCVLCGMCACACPFDAVKLS 89
Query: 154 -GEKAVVD--------------KDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSV 198
+K + + + C+ C C CP AI V + ++ + + ++
Sbjct: 90 INDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITI 149
Query: 199 DSDLCIGCGDCTDKCPRDLIVL--NEM----------VAVPPKGCPACGLCKAACPVDAI 246
D C+ CG C + CP D I L N+M + + C C +C+ ACP +AI
Sbjct: 150 KKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAI 209
Query: 247 ELVVEYASP------KPITDEGIVW----DEEKCAYCGPCAIKCPNNAITVVNPKGLEMP 296
E + Y P KP I D++ C CG CA CP +AI V P
Sbjct: 210 EAIC-YKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPF----- 263
Query: 297 SRKKTEKANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIET 356
+ E + C CGAC+ CP +AL + G + + + ++C CG C +
Sbjct: 264 ---EGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHS 320
Query: 357 CPYDML 362
CP D L
Sbjct: 321 CPVDAL 326
Score = 100 bits (250), Expect = 5e-26
Identities = 76/268 (28%), Positives = 112/268 (41%), Gaps = 60/268 (22%)
Query: 6 TEDCYMCKACENSCPTEALKLN----PF-----------------KVCQLCGNCVNVCPN 44
+E C +C C +CP +A+KL+ P C LC C VCP
Sbjct: 68 SEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQ 127
Query: 45 DALNL-REI-ELNGKTIKQIAYFPTKCDLCGECVKVCP-------------------NNL 83
A+++ RE+ E + +I C LCG C + CP ++
Sbjct: 128 CAIDVEREVPERKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADI 187
Query: 84 KIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLP------KEPIAVTED-CV 136
KI+ D CV C C ACP + + P I P K + +D CV
Sbjct: 188 KIDLDA----CVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCV 243
Query: 137 GCGVCISECPVGALSIEGE---KAVVDKDSCIYCSICAQTCPWNA-IFVAGKKSPKRDKN 192
CG C + CP A+ +E + ++D+ +C C C CP NA +F +K + N
Sbjct: 244 SCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALVFPQPEKQGDKVPN 303
Query: 193 IVKFSVDSDLCIGCGDCTDKCPRDLIVL 220
+V V+ D+CI CG CT CP D + +
Sbjct: 304 VV---VNQDVCILCGACTHSCPVDALTV 328
Score = 97.1 bits (240), Expect = 7e-25
Identities = 75/269 (27%), Positives = 113/269 (42%), Gaps = 42/269 (15%)
Query: 155 EKAVVDKD--SCIYCSICAQTCPWNAIFVAGKKSP-KRDKNIVKFSVDSDLCIGCGDCTD 211
EK V+ D +C+ C IC++ CP +AI + + K D + K + S+ C+ CG C
Sbjct: 21 EKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDI-SEKCVLCGMCAC 79
Query: 212 KCPRDLIVLN-------EMVAVPP---------KGCPACGLCKAACPVDAIELVVEYASP 255
CP D + L+ EM P C C C+ CP AI++ E
Sbjct: 80 ACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPER 139
Query: 256 KPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGA 315
K + I ++ C CG CA CP +AI ++ + + + C+ C
Sbjct: 140 KSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKV 199
Query: 316 CVQSCPNDALR-------IGKIIHNGKEYERIEFSPN----LCDSCGKCIETCPYDMLKL 364
C ++CP++A+ + I + Y I+ N LC SCG C CP D +++
Sbjct: 200 CEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCGWCANICPADAIEV 259
Query: 365 TGKSEKPLEG-------FCVMCLKCIEAC 386
EKP EG C C CI C
Sbjct: 260 ----EKPFEGELIIDEPACNACGACISVC 284
Score = 57.8 bits (138), Expect = 5e-13
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 9/86 (10%)
Query: 4 INTEDCYMCKACENSCPTEALKLN-PFK--------VCQLCGNCVNVCPNDALNLREIEL 54
I+ + C C C N CP +A+++ PF+ C CG C++VCP +AL + E
Sbjct: 237 IDKDLCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNALVFPQPEK 296
Query: 55 NGKTIKQIAYFPTKCDLCGECVKVCP 80
G + + C LCG C CP
Sbjct: 297 QGDKVPNVVVNQDVCILCGACTHSCP 322
Score = 45.8 bits (107), Expect = 2e-09
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 26/127 (20%)
Query: 279 KCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALR---IGKIIHNGK 335
K N+ + ++ G+E K+ K ++ C+ CG C + CP A+ +G I
Sbjct: 6 KDENDGVIEISRSGVE----KRVLKWDDCT-CVGCGICSEICPTSAIEMGPLGAIFKGDI 60
Query: 336 EYERIEFSPNLCDSCGKCIETCPYDMLKLTGKSEKPL----------------EGFCVMC 379
+ +++ S C CG C CP+D +KL+ ++KP+ + CV+C
Sbjct: 61 DAPKLDISEK-CVLCGMCACACPFDAVKLS-INDKPITEMPQYPKIKRGIELNQSKCVLC 118
Query: 380 LKCIEAC 386
+C C
Sbjct: 119 EQCELVC 125