Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 52 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 54.7 bits (130), Expect = 5e-13
 Identities = 22/49 (44%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 131 VTEDCVGCGVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAI 179
           + + CVGC  C+  CPVGA+S+ G KA +D + C  C++C   CP +AI
Sbjct: 3   ILDKCVGCAGCVPFCPVGAISVFG-KAEIDMEMCTNCAVCKDYCPLDAI 50



 Score = 42.0 bits (97), Expect = 3e-09
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 11/57 (19%)

Query: 162 DSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLI 218
           D C+ C+ C   CP  AI V GK             +D ++C  C  C D CP D I
Sbjct: 5   DKCVGCAGCVPFCPVGAISVFGKAE-----------IDMEMCTNCAVCKDYCPLDAI 50



 Score = 42.0 bits (97), Expect = 3e-09
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query: 201 DLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCKAACPVDAI 246
           D C+GC  C   CP   I +     +  + C  C +CK  CP+DAI
Sbjct: 5   DKCVGCAGCVPFCPVGAISVFGKAEIDMEMCTNCAVCKDYCPLDAI 50



 Score = 36.6 bits (83), Expect = 1e-07
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 268 EKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDAL 325
           +KC  C  C   CP  AI+V     ++M            +MC  C  C   CP DA+
Sbjct: 5   DKCVGCAGCVPFCPVGAISVFGKAEIDM------------EMCTNCAVCKDYCPLDAI 50



 Score = 35.8 bits (81), Expect = 2e-07
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALS 151
           CVGC  CV  CP   + + G  E                E C  C VC   CP+ A+S
Sbjct: 7   CVGCAGCVPFCPVGAISVFGKAE-------------IDMEMCTNCAVCKDYCPLDAIS 51



 Score = 35.4 bits (80), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 9/53 (16%)

Query: 310 CIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDML 362
           C+ C  CV  CP  A+ +         + + E    +C +C  C + CP D +
Sbjct: 7   CVGCAGCVPFCPVGAISV---------FGKAEIDMEMCTNCAVCKDYCPLDAI 50



 Score = 32.3 bits (72), Expect = 3e-06
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 347 CDSCGKCIETCPYDMLKLTGKSEKPLEGFCVMCLKCIEAC 386
           C  C  C+  CP   + + GK+E  +E  C  C  C + C
Sbjct: 7   CVGCAGCVPFCPVGAISVFGKAEIDME-MCTNCAVCKDYC 45



 Score = 29.3 bits (64), Expect = 2e-05
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 7  EDCYMCKACENSCPTEALKLN-----PFKVCQLCGNCVNVCPNDALN 48
          + C  C  C   CP  A+ +        ++C  C  C + CP DA++
Sbjct: 5  DKCVGCAGCVPFCPVGAISVFGKAEIDMEMCTNCAVCKDYCPLDAIS 51



 Score = 28.5 bits (62), Expect = 4e-05
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 231 CPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAIT 286
           C  C  C   CPV AI +  +              D E C  C  C   CP +AI+
Sbjct: 7   CVGCAGCVPFCPVGAISVFGKAEI-----------DMEMCTNCAVCKDYCPLDAIS 51



 Score = 27.3 bits (59), Expect = 8e-05
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 7/43 (16%)

Query: 68  KCDLCGECVKVCPNNL-----KIENDKLKGFCVGCMKCVDACP 105
           KC  C  CV  CP        K E D     C  C  C D CP
Sbjct: 6   KCVGCAGCVPFCPVGAISVFGKAEID--MEMCTNCAVCKDYCP 46



 Score = 24.6 bits (52), Expect = 5e-04
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 3  KINTEDCYMCKACENSCPTEAL 24
          +I+ E C  C  C++ CP +A+
Sbjct: 29 EIDMEMCTNCAVCKDYCPLDAI 50



 Score = 23.5 bits (49), Expect = 0.001
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 15/52 (28%)

Query: 32 CQLCGNCVNVCPNDALNL---REIELNGKTIKQIAYFPTKCDLCGECVKVCP 80
          C  C  CV  CP  A+++    EI++              C  C  C   CP
Sbjct: 7  CVGCAGCVPFCPVGAISVFGKAEIDME------------MCTNCAVCKDYCP 46