Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 132 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 62.0 bits (149), Expect = 9e-15
 Identities = 26/48 (54%), Positives = 34/48 (70%), Gaps = 1/48 (2%)

Query: 133 EDCVGCGVCISECPVGALSIEGE-KAVVDKDSCIYCSICAQTCPWNAI 179
           E C+ CG C+  CPVGALS++ E K ++D+D CI C  CA+ CP NAI
Sbjct: 80  EKCIDCGACVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICPVNAI 127



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 22/71 (30%)

Query: 266 DEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKM------CIRCGACVQS 319
           D+EKC  CG C + CP  A++V                  EFK+      CI C  C + 
Sbjct: 78  DDEKCIDCGACVVHCPVGALSV----------------DEEFKILLDEDECIGCKNCAKI 121

Query: 320 CPNDALRIGKI 330
           CP +A++I +I
Sbjct: 122 CPVNAIKIFEI 132



 Score = 40.8 bits (94), Expect = 2e-08
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 231 CPACGLCKAACPVDAIELVVEYASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITV 287
           C  CG C   CPV A+ +  E+          I+ DE++C  C  CA  CP NAI +
Sbjct: 82  CIDCGACVVHCPVGALSVDEEFK---------ILLDEDECIGCKNCAKICPVNAIKI 129



 Score = 40.0 bits (92), Expect = 4e-08
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)

Query: 160 DKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIV 219
           D + CI C  C   CP  A+ V  +          K  +D D CIGC +C   CP + I 
Sbjct: 78  DDEKCIDCGACVVHCPVGALSVDEE---------FKILLDEDECIGCKNCAKICPVNAIK 128

Query: 220 LNEM 223
           + E+
Sbjct: 129 IFEI 132



 Score = 38.9 bits (89), Expect = 8e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 1   MIKINTEDCYMCKACENSCPTEALKLNP-FKV------CQLCGNCVNVCPNDALNLREI 52
           +I+ + E C  C AC   CP  AL ++  FK+      C  C NC  +CP +A+ + EI
Sbjct: 74  IIQKDDEKCIDCGACVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICPVNAIKIFEI 132



 Score = 35.0 bits (79), Expect = 1e-06
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 13/60 (21%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTED-CVGCGVCISECPVGALSI 152
           C+ C  CV  CP   VG   V E  K         I + ED C+GC  C   CPV A+ I
Sbjct: 82  CIDCGACVVHCP---VGALSVDEEFK---------ILLDEDECIGCKNCAKICPVNAIKI 129



 Score = 33.1 bits (74), Expect = 4e-06
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 8/87 (9%)

Query: 308 KMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNL-------CDSCGKCIETCPYD 360
           KM  R G  +     D  +I K I   K++  +E  P +       C  CG C+  CP  
Sbjct: 36  KMEPREGFLILELTGDEGQIEKSIEILKKFGEVEDIPKIIQKDDEKCIDCGACVVHCPVG 95

Query: 361 MLKLTGKSEKPL-EGFCVMCLKCIEAC 386
            L +  + +  L E  C+ C  C + C
Sbjct: 96  ALSVDEEFKILLDEDECIGCKNCAKIC 122



 Score = 32.7 bits (73), Expect = 6e-06
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 68  KCDLCGECVKVCPNNLKIENDKLK-----GFCVGCMKCVDACP 105
           KC  CG CV  CP      +++ K       C+GC  C   CP
Sbjct: 81  KCIDCGACVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICP 123



 Score = 30.4 bits (67), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 32  CQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPNN 82
           C  CG CV  CP  AL++ E         +I     +C  C  C K+CP N
Sbjct: 82  CIDCGACVVHCPVGALSVDEEF-------KILLDEDECIGCKNCAKICPVN 125