Pairwise Alignments
Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2
Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ
Score = 115 bits (289), Expect = 2e-30
Identities = 86/293 (29%), Positives = 123/293 (41%), Gaps = 60/293 (20%)
Query: 7 EDCYMCKACENSCPTEALKLN---PFKV---------CQLCGNCVNVCPNDALNL----- 49
E C C AC+ SCP++A+ + FK C CGNCV CP + L +
Sbjct: 47 EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106
Query: 50 --REIELNGKTIKQIAYFPTKCDLCGECVKVCP------NNLKIENDKLKGFCVGCMKCV 101
+E+ N I + C CG C CP NN + + CV C C+
Sbjct: 107 EAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAISHNNTGLYEIDVN-ICVSCKNCL 165
Query: 102 DACPDSYV-------GMEGVVEPAKR---------------NITLPKEPIAVTEDCVGCG 139
CP G+ +E A+ + + + P V C+GCG
Sbjct: 166 KVCPVENAIVTYDEPGLSEKIEIAQNTKFDRERLGSDFKEESDVIAEIPRIVPSLCIGCG 225
Query: 140 VCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVA-GKKSPKRDKNIVKFSV 198
C+ CP G++ +E K SCI C + CP AI + +K KR + V
Sbjct: 226 NCVDVCP-GSIDLERLKVT----SCIKSGKCLEVCPTTAIRIGVPEKITKRTAEC--YIV 278
Query: 199 DSDLCIGCGDCTDKC--PRDLIVLNE--MVAVPPKGCPACGLCKAACPVDAIE 247
D + CIGC C C P +++ E + + P+ C CGLC+ ACPVDAI+
Sbjct: 279 DEEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAID 331
Score = 114 bits (286), Expect = 4e-30
Identities = 90/307 (29%), Positives = 132/307 (42%), Gaps = 51/307 (16%)
Query: 57 KTIKQIAYFPTKCDLCGECVKVCPNN-LKIE-NDKLK--------GFCVGCMKCVDACPD 106
+ I I P KC C C + CP++ + +E N++ K G C+ C CV++CP
Sbjct: 37 RKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPT 96
Query: 107 SYVGMEGVVEPAKRNI-TLPK--EPIAVTEDCVGCGVCISECPVGALSIEGEKAV-VDKD 162
+ + M + + AK + +PK + E CV CG C + CPV A+S +D +
Sbjct: 97 NVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAISHNNTGLYEIDVN 156
Query: 163 SCIYCSICAQTCPW-NAIF------------VAGKKSPKRDKNIVKFSVDSD-------- 201
C+ C C + CP NAI +A R++ F +SD
Sbjct: 157 ICVSCKNCLKVCPVENAIVTYDEPGLSEKIEIAQNTKFDRERLGSDFKEESDVIAEIPRI 216
Query: 202 ---LCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCKAACPVDAIELVVEYASPKPI 258
LCIGCG+C D CP + ++ + C G C CP AI + V K
Sbjct: 217 VPSLCIGCGNCVDVCPGSI----DLERLKVTSCIKSGKCLEVCPTTAIRIGVPEKITKR- 271
Query: 259 TDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQ 318
T E + DEEKC C C C N ++ K +P + C+RCG C
Sbjct: 272 TAECYIVDEEKCIGCRICYRAC-NVPEAILISKETNLPYINP-------EYCVRCGLCQN 323
Query: 319 SCPNDAL 325
+CP DA+
Sbjct: 324 ACPVDAI 330
Score = 98.6 bits (244), Expect = 3e-25
Identities = 75/299 (25%), Positives = 116/299 (38%), Gaps = 65/299 (21%)
Query: 133 EDCVGCGVCISECPVGALSIE------GEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKS 186
E C+ C C CP A+S+E E V D SCI C C ++CP N + + +
Sbjct: 47 EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRK 106
Query: 187 PKRD-----KNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNE--MVAVPPKGCPACGLCKA 239
++ I+ +D ++C+ CG C + CP D I N + + C +C C
Sbjct: 107 EAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAISHNNTGLYEIDVNICVSCKNCLK 166
Query: 240 ACPVDAIELVVEYASP----KPITDEGIVWDEEK----------------------CAYC 273
CPV+ +V Y P K + +D E+ C C
Sbjct: 167 VCPVE--NAIVTYDEPGLSEKIEIAQNTKFDRERLGSDFKEESDVIAEIPRIVPSLCIGC 224
Query: 274 GPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIG---KI 330
G C CP + +++ K T CI+ G C++ CP A+RIG KI
Sbjct: 225 GNCVDVCPGS---------IDLERLKVTS-------CIKSGKCLEVCPTTAIRIGVPEKI 268
Query: 331 IHNGKEYERIEFSPNLCDSCGKCIETCPY-DMLKLTGKSEKPL--EGFCVMCLKCIEAC 386
E ++ C C C C + + ++ ++ P +CV C C AC
Sbjct: 269 TKRTAECYIVD--EEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNAC 325
Score = 88.6 bits (218), Expect = 3e-22
Identities = 62/212 (29%), Positives = 91/212 (42%), Gaps = 40/212 (18%)
Query: 4 INTEDCYMCKACENSCPTEALKLN-------PFKVCQLCGNCVNVCP--NDALNLREIEL 54
I+ E C C CEN+CP +A+ N +C C NC+ VCP N + E L
Sbjct: 123 IDEEICVSCGTCENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCPVENAIVTYDEPGL 182
Query: 55 NGK-TIKQIAYF-----------------------PTKCDLCGECVKVCPNNLKIENDKL 90
+ K I Q F P+ C CG CV VCP ++ +E K+
Sbjct: 183 SEKIEIAQNTKFDRERLGSDFKEESDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKV 242
Query: 91 KGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVG-- 148
C+ KC++ CP + + + GV P K + I E C+GC +C C V
Sbjct: 243 TS-CIKSGKCLEVCPTTAIRI-GV--PEKITKRTAECYIVDEEKCIGCRICYRACNVPEA 298
Query: 149 -ALSIEGEKAVVDKDSCIYCSICAQTCPWNAI 179
+S E ++ + C+ C +C CP +AI
Sbjct: 299 ILISKETNLPYINPEYCVRCGLCQNACPVDAI 330
Score = 75.1 bits (183), Expect = 3e-18
Identities = 60/242 (24%), Positives = 92/242 (38%), Gaps = 61/242 (25%)
Query: 187 PKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVL-------NEMVAVPPKGCPACGLCKA 239
P+R + I + CI C C + CP D I + EM C CG C
Sbjct: 33 PERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVE 92
Query: 240 ACPVDAIELVVEYASPKPITDE-----GIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLE 294
+CP + +E+ K + ++ DEE C CG C CP +AI+ N E
Sbjct: 93 SCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDAISHNNTGLYE 152
Query: 295 MPSRKKTEKANEFKMCIRCGACVQSCPNDALRIG----------KIIHNGK-EYERI--- 340
+ + +C+ C C++ CP + + +I N K + ER+
Sbjct: 153 I----------DVNICVSCKNCLKVCPVENAIVTYDEPGLSEKIEIAQNTKFDRERLGSD 202
Query: 341 ------------EFSPNLCDSCGKCIETCP----YDMLKLTGKSEKPLEGFCVMCLKCIE 384
P+LC CG C++ CP + LK+T C+ KC+E
Sbjct: 203 FKEESDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKVTS---------CIKSGKCLE 253
Query: 385 AC 386
C
Sbjct: 254 VC 255
Score = 34.3 bits (77), Expect = 6e-06
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 4 INTEDCYMCKACENSC----------PTEALKLNPFKVCQLCGNCVNVCPNDALNLREIE 53
++ E C C+ C +C T +NP + C CG C N CP DA++ + E
Sbjct: 278 VDEEKCIGCRICYRACNVPEAILISKETNLPYINP-EYCVRCGLCQNACPVDAIDYLKTE 336