Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score =  100 bits (249), Expect = 5e-26
 Identities = 69/242 (28%), Positives = 104/242 (42%), Gaps = 70/242 (28%)

Query: 82  NLKIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVC 141
           NL +E++K    C+ C  C + CP   +    V  PA+           + E CV C +C
Sbjct: 40  NLYVESNK----CIRCELCYEVCPVDAIKEPSVKSPAE----------IIPEKCVKCEIC 85

Query: 142 ISECPVGALSI-EGE-------------------------KAVVDKDSCIYCSICAQTCP 175
              CPVGA+++ EG                          K  +D++SCI C IC + CP
Sbjct: 86  AKTCPVGAINVLEGRAKLEEDTVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCP 145

Query: 176 WNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLI-VLNEM--------VAV 226
            +AI V  + S           ++ DLC+GC  C   CP+  I V NEM        +++
Sbjct: 146 TSAITVEKRNS---------IDINLDLCMGCTACEKVCPKSAIKVENEMGEITAENEISL 196

Query: 227 PPKGCPACGLCKAACPVDAIELVVEYASPKPITDEGIV-WDEEKCAYCGPCAIKCPNNAI 285
               C  C +C   CPV AI           + ++G++  D++ C +CG C   CP  AI
Sbjct: 197 NNDTCINCMVCSEICPVGAI-----------VYEDGLMKLDDKMCIFCGKCEKNCPVTAI 245

Query: 286 TV 287
            +
Sbjct: 246 AI 247



 Score = 90.5 bits (223), Expect = 5e-23
 Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 35/212 (16%)

Query: 4   INTEDCYMCKACENSCPTEALK----LNPFKV----CQLCGNCVNVCPNDALN------- 48
           + +  C  C+ C   CP +A+K     +P ++    C  C  C   CP  A+N       
Sbjct: 43  VESNKCIRCELCYEVCPVDAIKEPSVKSPAEIIPEKCVKCEICAKTCPVGAINVLEGRAK 102

Query: 49  ---------LREIELNGKTIKQIAYF--PTKCDLCGECVKVCPNN-LKIEN----DKLKG 92
                    L+EI++  + I+ + +      C  CG C + CP + + +E     D    
Sbjct: 103 LEEDTVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSIDINLD 162

Query: 93  FCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSI 152
            C+GC  C   CP S + +E  +      IT   E     + C+ C VC   CPVGA+  
Sbjct: 163 LCMGCTACEKVCPKSAIKVENEMG----EITAENEISLNNDTCINCMVCSEICPVGAIVY 218

Query: 153 EGEKAVVDKDSCIYCSICAQTCPWNAIFVAGK 184
           E     +D   CI+C  C + CP  AI +  K
Sbjct: 219 EDGLMKLDDKMCIFCGKCEKNCPVTAIAIKQK 250



 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 54/211 (25%), Positives = 86/211 (40%), Gaps = 35/211 (16%)

Query: 198 VDSDLCIGCGDCTDKCPRDLIV---LNEMVAVPPKGCPACGLCKAACPVDAIELVVEYAS 254
           V+S+ CI C  C + CP D I    +     + P+ C  C +C   CPV AI ++   A 
Sbjct: 43  VESNKCIRCELCYEVCPVDAIKEPSVKSPAEIIPEKCVKCEICAKTCPVGAINVLEGRAK 102

Query: 255 PKPITDEGIVW-------------------DEEKCAYCGPCAIKCPNNAITVVNPKGLEM 295
              + ++ +V+                   DEE C  CG C   CP +AITV     +++
Sbjct: 103 ---LEEDTVVYELKEIDVTHRKIRLVKHELDEESCIKCGICERFCPTSAITVEKRNSIDI 159

Query: 296 PSRKKTEKANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIE 355
                        +C+ C AC + CP  A+++   +        I  + + C +C  C E
Sbjct: 160 ----------NLDLCMGCTACEKVCPKSAIKVENEMGEITAENEISLNNDTCINCMVCSE 209

Query: 356 TCPYDMLKLTGKSEKPLEGFCVMCLKCIEAC 386
            CP   +       K  +  C+ C KC + C
Sbjct: 210 ICPVGAIVYEDGLMKLDDKMCIFCGKCEKNC 240



 Score = 54.7 bits (130), Expect = 3e-12
 Identities = 39/159 (24%), Positives = 63/159 (39%), Gaps = 46/159 (28%)

Query: 3   KINTEDCYMCKACENSCPTEALKLNP-------FKVCQLCGNCVNVCPNDALNLREIELN 55
           +++ E C  C  CE  CPT A+ +           +C  C  C  VCP  A+ + E E+ 
Sbjct: 128 ELDEESCIKCGICERFCPTSAITVEKRNSIDINLDLCMGCTACEKVCPKSAIKV-ENEMG 186

Query: 56  GKTIKQIAYFPTKCDLCGECVKVCPNNLKIENDKLKGFCVGCMKCVDACP-DSYVGMEGV 114
             T +                    N + + ND     C+ CM C + CP  + V  +G+
Sbjct: 187 EITAE--------------------NEISLNNDT----CINCMVCSEICPVGAIVYEDGL 222

Query: 115 VEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSIE 153
           ++   +              C+ CG C   CPV A++I+
Sbjct: 223 MKLDDKM-------------CIFCGKCEKNCPVTAIAIK 248



 Score = 40.0 bits (92), Expect = 7e-08
 Identities = 31/115 (26%), Positives = 42/115 (36%), Gaps = 27/115 (23%)

Query: 2   IKINTEDCYMCKACENSCPTEALKLNPFKVCQLCGNCVNVCPNDALNLREIELNGKTIKQ 61
           I IN + C  C ACE  CP  A+K             V     +     EI LN  T   
Sbjct: 157 IDINLDLCMGCTACEKVCPKSAIK-------------VENEMGEITAENEISLNNDT--- 200

Query: 62  IAYFPTKCDLCGECVKVCPNNLKIENDKL----KGFCVGCMKCVDACPDSYVGME 112
                  C  C  C ++CP    +  D L       C+ C KC   CP + + ++
Sbjct: 201 -------CINCMVCSEICPVGAIVYEDGLMKLDDKMCIFCGKCEKNCPVTAIAIK 248



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 2   IKINTEDCYMCKACENSCPTEAL-------KLNPFKVCQLCGNCVNVCPNDALNLREIEL 54
           I +N + C  C  C   CP  A+       KL+  K+C  CG C   CP  A+ +++ ++
Sbjct: 194 ISLNNDTCINCMVCSEICPVGAIVYEDGLMKLDD-KMCIFCGKCEKNCPVTAIAIKQKDM 252



 Score = 27.3 bits (59), Expect = 5e-04
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 1   MIKINTEDCYMCKACENSCPTEALKL 26
           ++K++ + C  C  CE +CP  A+ +
Sbjct: 222 LMKLDDKMCIFCGKCEKNCPVTAIAI 247