Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 154 a.a., 4Fe-4S dicluster domain-containing protein from Methanococcus maripaludis JJ

 Score = 57.0 bits (136), Expect = 3e-13
 Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 29/139 (20%)

Query: 198 VDSDLCIGCGDCTDKCPRDLIVLNEMVAVP-PKGCPAC----GLCKAACPVDAIELVVEY 252
           VD+  C  C DC + C ++  V   +     P  C  C      CK  CPV+AIE +   
Sbjct: 7   VDARKCTECNDCIEACKKEHGVARAIKTHSIPMFCLQCHPDKAPCKQVCPVNAIEEL--- 63

Query: 253 ASPKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIR 312
                  D  +V DEE C  C  C + CP  A+T+           K  +   +  +C+ 
Sbjct: 64  -------DGALVVDEESCILCRLCMVACPIGALTI----------NKDAKSVQKCTLCME 106

Query: 313 CG----ACVQSCPNDALRI 327
                 ACV++C ++ L++
Sbjct: 107 TDRMLPACVEACKSNVLKL 125



 Score = 46.2 bits (108), Expect = 6e-10
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 27/115 (23%)

Query: 68  KCDLCGECVKVCPNN----LKIENDKLKGFCVGC----MKCVDACP-DSYVGMEGVVEPA 118
           KC  C +C++ C         I+   +  FC+ C      C   CP ++   ++G +   
Sbjct: 11  KCTECNDCIEACKKEHGVARAIKTHSIPMFCLQCHPDKAPCKQVCPVNAIEELDGAL--- 67

Query: 119 KRNITLPKEPIAVTEDCVGCGVCISECPVGALSIEGEKAVVDKDSCIYCSICAQT 173
                     +   E C+ C +C+  CP+GAL+I  +   V K     C++C +T
Sbjct: 68  ----------VVDEESCILCRLCMVACPIGALTINKDAKSVQK-----CTLCMET 107



 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 21/131 (16%)

Query: 94  CVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGC----GVCISECPVGA 149
           C  C  C++AC   +    GV    K +        ++   C+ C      C   CPV A
Sbjct: 12  CTECNDCIEACKKEH----GVARAIKTH--------SIPMFCLQCHPDKAPCKQVCPVNA 59

Query: 150 LSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDC 209
           +       VVD++SCI C +C   CP  A+ +      K  K++ K ++  +       C
Sbjct: 60  IEELDGALVVDEESCILCRLCMVACPIGALTI-----NKDAKSVQKCTLCMETDRMLPAC 114

Query: 210 TDKCPRDLIVL 220
            + C  +++ L
Sbjct: 115 VEACKSNVLKL 125



 Score = 35.0 bits (79), Expect = 1e-06
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 4   INTEDCYMCKACENSCPTEALKLN----PFKVCQLCGN-------CVNVCPNDALNLREI 52
           ++ E C +C+ C  +CP  AL +N      + C LC         CV  C ++ L L  +
Sbjct: 69  VDEESCILCRLCMVACPIGALTINKDAKSVQKCTLCMETDRMLPACVEACKSNVLKLFSV 128

Query: 53  E 53
           E
Sbjct: 129 E 129



 Score = 32.0 bits (71), Expect = 1e-05
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 308 KMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSC----GKCIETCPYDMLK 363
           + C  C  C+++C  +        H      +    P  C  C      C + CP + ++
Sbjct: 10  RKCTECNDCIEACKKE--------HGVARAIKTHSIPMFCLQCHPDKAPCKQVCPVNAIE 61

Query: 364 LTGKSEKPLEGFCVMCLKCIEAC 386
               +    E  C++C  C+ AC
Sbjct: 62  ELDGALVVDEESCILCRLCMVAC 84



 Score = 24.3 bits (51), Expect = 0.002
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 376 CVMCLKCIEACDKAKKSALSLK 397
           C  C  CIEAC K    A ++K
Sbjct: 12  CTECNDCIEACKKEHGVARAIK 33