Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 244 a.a., iron-sulfur cluster-binding protein NapG (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 55.8 bits (133), Expect = 1e-12
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 24/152 (15%)

Query: 85  IENDKLKGFCVGCMKCVDACPDSYVGMEGVVEPAKRN---ITLPKEPIAVTEDCVGCGVC 141
           +E       CV C  CV+ACP   + +    + A       T    P  + ED      C
Sbjct: 58  LEESDFLSACVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMCEDIP----C 113

Query: 142 ISECPVGALSIE---------GEKAVVDKDSCIY-----CSICAQTCPW--NAIFVAGKK 185
           I  CP GAL  +         G   ++D+ +C+      C +C + CP   NAI +  ++
Sbjct: 114 IKACPSGALDPQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQR 173

Query: 186 SPKRDKNIVKF-SVDSDLCIGCGDCTDKCPRD 216
           +   D + +   +V+SD C GCG C   C  D
Sbjct: 174 NQHSDHHAMFLPTVNSDTCTGCGKCEHACVLD 205



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 20/144 (13%)

Query: 203 CIGCGDCTDKCPRDLIVLNEMVAVPPKGCP-------ACGLCK-----AACPVDAIELVV 250
           C+ CG C + CP D + L         G P        C +C+      ACP  A++  +
Sbjct: 67  CVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMCEDIPCIKACPSGALDPQL 126

Query: 251 EYASPKPITDEGIVWDEEKC-----AYCGPCAIKCP--NNAITVVNPKGLEMPSRKKTEK 303
           E+ S   +    ++ DE+ C       C  C   CP  +NAIT+   +            
Sbjct: 127 EHISDAKM-GIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQHSDHHAMFLP 185

Query: 304 ANEFKMCIRCGACVQSCPNDALRI 327
                 C  CG C  +C  D   I
Sbjct: 186 TVNSDTCTGCGKCEHACVLDTAAI 209



 Score = 42.4 bits (98), Expect = 1e-08
 Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 27/148 (18%)

Query: 231 CPACGLCKAACPVDAIELVVEY---ASPKPITDEGIVWDEEKCAYCG--PCAIKCPNNAI 285
           C  CGLC  ACP D + L   +   A+  P      +     C  C   PC   CP+ A+
Sbjct: 67  CVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHI----PCEMCEDIPCIKACPSGAL 122

Query: 286 TVVNPKGLEMPSRKKTEKA--NEFKMC-----IRCGACVQSCP--NDALRIGKIIHNGKE 336
              +P+ LE  S  K   A   + K C     +RC  C + CP  ++A+ + +  +   +
Sbjct: 123 ---DPQ-LEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQHSD 178

Query: 337 YERIEFSPNL----CDSCGKCIETCPYD 360
           +  + F P +    C  CGKC   C  D
Sbjct: 179 HHAM-FLPTVNSDTCTGCGKCEHACVLD 205



 Score = 37.7 bits (86), Expect = 4e-07
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 302 EKANEFKMCIRCGACVQSCPNDALRIGKIIH---NGKEYERIEFSPNLCDSCG--KCIET 356
           E+++    C+RCG CV++CP D L + +       G  +      P  C+ C    CI+ 
Sbjct: 59  EESDFLSACVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIP--CEMCEDIPCIKA 116

Query: 357 CP 358
           CP
Sbjct: 117 CP 118



 Score = 35.4 bits (80), Expect = 2e-06
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 11/51 (21%)

Query: 347 CDSCGKCIETCPYDMLKLTGKSEKPLEGF---------CVMC--LKCIEAC 386
           C  CG C+E CPYD L L    +    G          C MC  + CI+AC
Sbjct: 67  CVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMCEDIPCIKAC 117



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 4   INTEDCYMCKACENSC--PTEALKLNP 28
           +N++ C  C  CE++C   T A+K+ P
Sbjct: 187 VNSDTCTGCGKCEHACVLDTAAIKVLP 213