Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 544 a.a., glutamate synthase, iron-sulfur cluster-binding subunit, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 49.7 bits (117), Expect = 2e-10
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 15/79 (18%)

Query: 263 IVWDEEKCAYCGPCAIKCPNNAI--------TVVNPKGL-EMPSRKKT------EKANEF 307
           + WD   CA CG C   CP NAI         V  P GL + PS   T      ++ +  
Sbjct: 21  VEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAA 80

Query: 308 KMCIRCGACVQSCPNDALR 326
             C+ CG C   CPN+A+R
Sbjct: 81  YACVGCGMCTMVCPNNAIR 99



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 26/93 (27%), Positives = 35/93 (37%), Gaps = 17/93 (18%)

Query: 61  QIAYFPTKCDLCGECVKVCPNN---LKIENDKLKGFCVGCMKCVDACPDSYVGMEGVVEP 117
           Q+ +    C LCG C  VCP N   L +   ++    VG  K        Y G+    + 
Sbjct: 20  QVEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDA 79

Query: 118 AKRNITLPKEPIAVTEDCVGCGVCISECPVGAL 150
           A                CVGCG+C   CP  A+
Sbjct: 80  AYA--------------CVGCGMCTMVCPNNAI 98



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 20/95 (21%)

Query: 199 DSDLCIGCGDCTDKCPRDLIVL----NEMVAVPPKGCPACGLCKAACPVDAIELVVEYAS 254
           D   C  CG CT  CP + I L      +V  P       GL K       +     Y  
Sbjct: 24  DRATCALCGRCTAVCPVNAIELGVHRQRIVDAP------VGLAKRPSNAHTV-----YHG 72

Query: 255 PKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVN 289
            +  TD         C  CG C + CPNNAI  V+
Sbjct: 73  VRQRTDAAYA-----CVGCGMCTMVCPNNAIRPVH 102



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 16/75 (21%)

Query: 160 DKDSCIYCSICAQTCPWNAIFVAGKKS---------PKRDKNI------VKFSVDSDL-C 203
           D+ +C  C  C   CP NAI +   +           KR  N       V+   D+   C
Sbjct: 24  DRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAAYAC 83

Query: 204 IGCGDCTDKCPRDLI 218
           +GCG CT  CP + I
Sbjct: 84  VGCGMCTMVCPNNAI 98



 Score = 35.4 bits (80), Expect = 4e-06
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 18/69 (26%)

Query: 32 CQLCGNCVNVCPNDALNL-----REIEL---------NGKT----IKQIAYFPTKCDLCG 73
          C LCG C  VCP +A+ L     R ++          N  T    ++Q       C  CG
Sbjct: 28 CALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAAYACVGCG 87

Query: 74 ECVKVCPNN 82
           C  VCPNN
Sbjct: 88 MCTMVCPNN 96



 Score = 28.5 bits (62), Expect = 5e-04
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 28/110 (25%)

Query: 281 PNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIG------------ 328
           P   IT       ++P + + ++A     C  CG C   CP +A+ +G            
Sbjct: 3   PAQGITPSTLSVKDLPWQVEWDRAT----CALCGRCTAVCPVNAIELGVHRQRIVDAPVG 58

Query: 329 ---------KIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTGKSE 369
                     + H  ++     ++   C  CG C   CP + ++   ++E
Sbjct: 59  LAKRPSNAHTVYHGVRQRTDAAYA---CVGCGMCTMVCPNNAIRPVHQAE 105



 Score = 26.9 bits (58), Expect = 0.001
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 32/71 (45%)

Query: 9  CYMCKACENSCPTEALKLNPFK--------------------------------VCQLCG 36
          C +C  C   CP  A++L   +                                 C  CG
Sbjct: 28 CALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTDAAYACVGCG 87

Query: 37 NCVNVCPNDAL 47
           C  VCPN+A+
Sbjct: 88 MCTMVCPNNAI 98