Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 295 a.a., NADH:quinone oxidoreductase subunit RnfB (Shelley Haveman) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 59.7 bits (143), Expect = 1e-13
 Identities = 41/136 (30%), Positives = 60/136 (44%), Gaps = 23/136 (16%)

Query: 203 CIGCGDCTDKCPRDLI-VLNEMVAVPPKGCPACGLCKAACPVDAIEL------VVEYASP 255
           C+G GDC + CP D + + N +  V    C  CG+C  ACP + +EL      V    S 
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCST 199

Query: 256 KPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCG- 314
           K      +   E  C  CG C   CP +AI+    + +E+  +K          C+  G 
Sbjct: 200 KEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGR-IEIDQKK----------CLSYGP 248

Query: 315 ----ACVQSCPNDALR 326
               ACV +CP + +R
Sbjct: 249 DCNEACVTACPRNIMR 264



 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 46/162 (28%), Positives = 59/162 (36%), Gaps = 39/162 (24%)

Query: 135 CVGCGVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIV 194
           C+G G C+  CP  AL IE     VD   C  C +C   CP N +    +  P R +  V
Sbjct: 140 CLGLGDCVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTL----ELIPVRARVAV 195

Query: 195 KFSVDSDLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCKAACPVDAIELVVEYAS 254
             S                      L  ++ V   GC  CG C  ACP  AI        
Sbjct: 196 MCSTKEK------------------LKAVMEVCEVGCINCGKCVKACPAHAIS------- 230

Query: 255 PKPITDEG-IVWDEEKCAYCGP-----CAIKCPNNAITVVNP 290
                + G I  D++KC   GP     C   CP N +  + P
Sbjct: 231 ----QETGRIEIDQKKCLSYGPDCNEACVTACPRNIMRHMCP 268



 Score = 55.1 bits (131), Expect = 3e-12
 Identities = 46/154 (29%), Positives = 63/154 (40%), Gaps = 41/154 (26%)

Query: 18  SCPTEALKLNPFKVCQLC----GNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCG 73
           SC   AL  +    C       G+CV VCP DAL++     NG T   +A    KC  CG
Sbjct: 122 SCAAAALLFDGSDSCSYSCLGLGDCVEVCPFDALHIE----NGLTHVDLA----KCTGCG 173

Query: 74  ECVKVCPNN-------------LKIENDKLKGF-------CVGCMKCVDACPDSYVGME- 112
            C+  CP N             +    +KLK         C+ C KCV ACP   +  E 
Sbjct: 174 VCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAISQET 233

Query: 113 GVVEPAKRNITLPKEPIAVTEDCVGCGVCISECP 146
           G +E  +      K+ ++   DC     C++ CP
Sbjct: 234 GRIEIDQ------KKCLSYGPDC--NEACVTACP 259



 Score = 47.0 bits (110), Expect = 7e-10
 Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 23/114 (20%)

Query: 15  CENSCPTEALKLN------PFKVCQLCGNCVNVCPNDALNL----REIELNGKTIKQIAY 64
           C   CP +AL +           C  CG C+N CP + L L      + +   T +++  
Sbjct: 146 CVEVCPFDALHIENGLTHVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKA 205

Query: 65  FPTKCDL----CGECVKVCP--------NNLKIENDKLKGFCVGCMK-CVDACP 105
               C++    CG+CVK CP          ++I+  K   +   C + CV ACP
Sbjct: 206 VMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKCLSYGPDCNEACVTACP 259



 Score = 44.3 bits (103), Expect = 5e-09
 Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 20/126 (15%)

Query: 270 CAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRI-- 327
           C   G C   CP +A+ + N  GL      K         C  CG C+ +CP + L +  
Sbjct: 140 CLGLGDCVEVCPFDALHIEN--GLTHVDLAK---------CTGCGVCINACPRNTLELIP 188

Query: 328 --GKIIHNGKEYERIEFSPNLCD----SCGKCIETCP-YDMLKLTGKSEKPLEGFCVMCL 380
              ++       E+++    +C+    +CGKC++ CP + + + TG+ E   +       
Sbjct: 189 VRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKACPAHAISQETGRIEIDQKKCLSYGP 248

Query: 381 KCIEAC 386
            C EAC
Sbjct: 249 DCNEAC 254



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 31/105 (29%)

Query: 4   INTEDCYMCKACENSCPTEALKLNP------------------FKVCQL----CGNCVNV 41
           ++   C  C  C N+CP   L+L P                   +VC++    CG CV  
Sbjct: 164 VDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVKA 223

Query: 42  CPNDALNLR--EIELNGKTIKQIAYFPTKCDLCGE-CVKVCPNNL 83
           CP  A++     IE++ K  K ++Y P     C E CV  CP N+
Sbjct: 224 CPAHAISQETGRIEIDQK--KCLSYGPD----CNEACVTACPRNI 262