Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 162 a.a., iron-sulfur cluster-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.2 bits (139), Expect = 2e-13
 Identities = 42/132 (31%), Positives = 54/132 (40%), Gaps = 25/132 (18%)

Query: 133 EDCVGCGVCISECP-------------VGALSIEGEKAVVDKDSCIYC--SICAQTCPWN 177
           E C+GC  C   C              +   S  G     +   C+ C  + CAQ CP  
Sbjct: 2   ERCIGCHACSLACARLVHKRLSWVTAGIRITSAGGLSTGFEARLCLACDPAPCAQACPTG 61

Query: 178 AIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLC 237
           A         +R    VK  VD  LCI CG C + CP D + ++    + P  C  CG C
Sbjct: 62  AY-------AQRKGGGVK--VDRSLCIRCGRCAEACPVDAVHMDGETGL-PYVCIHCGRC 111

Query: 238 KAACPVDAIELV 249
            A CP + IELV
Sbjct: 112 VAFCPHECIELV 123



 Score = 55.5 bits (132), Expect = 1e-12
 Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 268 EKCAYCGPCAIKCPNNAITVVN--PKGLEMPSRKKTEKANEFKMCIRC--GACVQSCPND 323
           E+C  C  C++ C       ++    G+ + S        E ++C+ C    C Q+CP  
Sbjct: 2   ERCIGCHACSLACARLVHKRLSWVTAGIRITSAGGLSTGFEARLCLACDPAPCAQACPTG 61

Query: 324 ALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDMLKLTGKSEKPLEGFCVMCLKCI 383
           A    K    G + +R     +LC  CG+C E CP D + + G++  P    C+ C +C+
Sbjct: 62  AYAQRK--GGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGETGLPY--VCIHCGRCV 112

Query: 384 EAC 386
             C
Sbjct: 113 AFC 115



 Score = 53.5 bits (127), Expect = 4e-12
 Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 25/139 (17%)

Query: 231 CPACGLCKAACPVDAIELVVEYASPKPITDEGIV---WDEEKCAYC--GPCAIKCPNNAI 285
           C  C  C  AC     + +    +   IT  G +   ++   C  C   PCA  CP  A 
Sbjct: 4   CIGCHACSLACARLVHKRLSWVTAGIRITSAGGLSTGFEARLCLACDPAPCAQACPTGAY 63

Query: 286 TVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPN 345
                 G+++          +  +CIRCG C ++CP DA      +H   E       P 
Sbjct: 64  AQRKGGGVKV----------DRSLCIRCGRCAEACPVDA------VHMDGETGL----PY 103

Query: 346 LCDSCGKCIETCPYDMLKL 364
           +C  CG+C+  CP++ ++L
Sbjct: 104 VCIHCGRCVAFCPHECIEL 122



 Score = 48.5 bits (114), Expect = 1e-10
 Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 20/134 (14%)

Query: 199 DSDLCIGC--GDCTDKCPRDLIVLNEM--VAVPPKGCPACGLCKAACPVDAIELVVEYAS 254
           ++ LC+ C    C   CP       +   V V    C  CG C  ACPVDA+ +  E   
Sbjct: 42  EARLCLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDGETGL 101

Query: 255 PKPITDEGIVWDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCG 314
           P              C +CG C   CP+  I +V+    +  S +   +  + K   R  
Sbjct: 102 P------------YVCIHCGRCVAFCPHECIELVDQPVADAASDEAGRETGDDKALPRKA 149

Query: 315 ACVQSCPNDALRIG 328
             V    NDA  +G
Sbjct: 150 GLV----NDASEVG 159



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 19/82 (23%)

Query: 9   CYMCKA--CENSCPTEAL---KLNPFKV----CQLCGNCVNVCPNDALNLREIELNGKTI 59
           C  C    C  +CPT A    K    KV    C  CG C   CP DA     + ++G+T 
Sbjct: 46  CLACDPAPCAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDA-----VHMDGET- 99

Query: 60  KQIAYFPTKCDLCGECVKVCPN 81
                 P  C  CG CV  CP+
Sbjct: 100 ----GLPYVCIHCGRCVAFCPH 117



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 2   IKINTEDCYMCKACENSCPTEALKLN-----PFKVCQLCGNCVNVCPNDALNL 49
           +K++   C  C  C  +CP +A+ ++     P+ VC  CG CV  CP++ + L
Sbjct: 71  VKVDRSLCIRCGRCAEACPVDAVHMDGETGLPY-VCIHCGRCVAFCPHECIEL 122



 Score = 35.0 bits (79), Expect = 1e-06
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 19/77 (24%)

Query: 75  CVKVCPNNLKIEND----KL-KGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPI 129
           C + CP     +      K+ +  C+ C +C +ACP   V M+G                
Sbjct: 54  CAQACPTGAYAQRKGGGVKVDRSLCIRCGRCAEACPVDAVHMDG--------------ET 99

Query: 130 AVTEDCVGCGVCISECP 146
            +   C+ CG C++ CP
Sbjct: 100 GLPYVCIHCGRCVAFCP 116