Pairwise Alignments

Query, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 76 a.a., ferredoxin (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 60.8 bits (146), Expect = 1e-14
 Identities = 27/62 (43%), Positives = 36/62 (58%), Gaps = 1/62 (1%)

Query: 121 NITLPKEPIAVTEDCVGCGVCISECPVGALSIEGEKAVVDKDSCIYCSICAQTCPWNAIF 180
           N+ L K    +++DC+ CG CI ECPV A+S EG+   ++ D C  C  CA  CP  AI 
Sbjct: 15  NLNLKKMAYVISDDCIACGTCIDECPVEAIS-EGDIYSINPDVCTDCGTCADVCPSEAIH 73

Query: 181 VA 182
            A
Sbjct: 74  PA 75



 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 1/71 (1%)

Query: 177 NAIFVAGKKSPKRDKNIVKFS-VDSDLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACG 235
           N  F+  ++    + N+ K + V SD CI CG C D+CP + I   ++ ++ P  C  CG
Sbjct: 2   NKSFIFAERISTNNLNLKKMAYVISDDCIACGTCIDECPVEAISEGDIYSINPDVCTDCG 61

Query: 236 LCKAACPVDAI 246
            C   CP +AI
Sbjct: 62  TCADVCPSEAI 72



 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 7/57 (12%)

Query: 1  MIKINTEDCYMCKACENSCPTEALK------LNPFKVCQLCGNCVNVCPNDALNLRE 51
          M  + ++DC  C  C + CP EA+       +NP  VC  CG C +VCP++A++  E
Sbjct: 21 MAYVISDDCIACGTCIDECPVEAISEGDIYSINP-DVCTDCGTCADVCPSEAIHPAE 76



 Score = 44.3 bits (103), Expect = 1e-09
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 310 CIRCGACVQSCPNDALRIGKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDML 362
           CI CG C+  CP +A+  G I            +P++C  CG C + CP + +
Sbjct: 29  CIACGTCIDECPVEAISEGDI---------YSINPDVCTDCGTCADVCPSEAI 72



 Score = 36.6 bits (83), Expect = 2e-07
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 52  IELNGKTIKQIAY-FPTKCDLCGECVKVCPNNLKIENDKLK---GFCVGCMKCVDACPDS 107
           I  N   +K++AY     C  CG C+  CP     E D        C  C  C D CP  
Sbjct: 11  ISTNNLNLKKMAYVISDDCIACGTCIDECPVEAISEGDIYSINPDVCTDCGTCADVCPSE 70

Query: 108 YV 109
            +
Sbjct: 71  AI 72



 Score = 35.8 bits (81), Expect = 4e-07
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 9/50 (18%)

Query: 32 CQLCGNCVNVCPNDALNLREIELNGKTIKQIAYFPTKCDLCGECVKVCPN 81
          C  CG C++ CP +A++  +I          +  P  C  CG C  VCP+
Sbjct: 29 CIACGTCIDECPVEAISEGDI---------YSINPDVCTDCGTCADVCPS 69



 Score = 32.3 bits (72), Expect = 4e-06
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 15/76 (19%)

Query: 77  KVCPNNLKIENDK--LKGFCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTED 134
           ++  NNL ++     +   C+ C  C+D CP   +  EG +     ++            
Sbjct: 10  RISTNNLNLKKMAYVISDDCIACGTCIDECPVEAIS-EGDIYSINPDV------------ 56

Query: 135 CVGCGVCISECPVGAL 150
           C  CG C   CP  A+
Sbjct: 57  CTDCGTCADVCPSEAI 72



 Score = 32.3 bits (72), Expect = 4e-06
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 22/63 (34%)

Query: 268 EKCAYCGPCAIKCPNNAITV-----VNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPN 322
           + C  CG C  +CP  AI+      +NP                  +C  CG C   CP+
Sbjct: 27  DDCIACGTCIDECPVEAISEGDIYSINPD-----------------VCTDCGTCADVCPS 69

Query: 323 DAL 325
           +A+
Sbjct: 70  EAI 72