Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 594 a.a., NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3) / NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Pseudomonas fluorescens FW300-N2E2

 Score = 44.3 bits (103), Expect = 1e-08
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 31/169 (18%)

Query: 15  HG--KVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICGICQVSHNLAS 72
           HG  ++ L  D    +D V       RG EK  E +       +T RI  +  V +NL  
Sbjct: 223 HGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLGGVMNNLPY 282

Query: 73  ARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGML-----ASPDLMFPMTDDALKR 127
             +V+ + G+K+P+  D++R +M +   + SH L  G       A   + F  TD     
Sbjct: 283 VLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGAMTPVFFTFTD----- 337

Query: 128 NVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPL 176
                              R+   T+I+ + G  +HP    +GG +  L
Sbjct: 338 -------------------RQKAYTVIEAITGFRLHPAWYRIGGVAHDL 367