Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 476 a.a., NAD-reducing hydrogenase HoxS beta subunit from Synechococcus elongatus PCC 7942

 Score =  321 bits (822), Expect = 4e-92
 Identities = 180/446 (40%), Positives = 259/446 (58%), Gaps = 3/446 (0%)

Query: 6   IEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICGICQ 65
           I+PVTR+EGH K+++  DD G  +   FHVVE RGFEKF EGR   +    T RICGIC 
Sbjct: 7   IDPVTRIEGHAKISVFLDDQGNAEAARFHVVEYRGFEKFCEGRPFTEMAGITARICGICP 66

Query: 66  VSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTDDAL 125
           VSH LA+A+  D +  V+IP  A+ LR L+  A  + SHAL F  L+SPD +     D  
Sbjct: 67  VSHLLAAAKTGDKILAVQIPPAAENLRRLINLAQIIQSHALSFFHLSSPDFLLGWDSDPA 126

Query: 126 KRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPLTEEERDELL 185
           +RN+ G+ + + +  +  I +R+ GQ +I+ +GGR IH   AV GG    L++E    + 
Sbjct: 127 RRNLFGLIAADPETARAGIRLRQFGQQLIEWLGGRKIHAAWAVPGGVRSLLSQEGMVWIR 186

Query: 186 KMSENLVDTAERTLVVGKQLLEGLKEQDLLELGYFESYHMGMV-NNGAQDIYEGKIRVVN 244
                 + T   TL   K+LL+    ++    G F S  MG+V +NG  + Y G +R V+
Sbjct: 187 DRLPAELATVRATLDRFKRLLDREFREETAVFGDFPSLFMGLVADNGDWEHYGGHLRFVD 246

Query: 245 PEGKIEYE-YEPSEYLNYMSEGVRPYSYLKFPYLTEKGPVDGVYRVNTLSRLNVCDRMPT 303
            +G+I  +     +Y +++ E V P+SYLKFPY    G  +G+YRV  L+RLNVCDR+ T
Sbjct: 247 SQGRIIADRLREDDYASFLGEAVEPWSYLKFPYYKPWGYPEGMYRVGPLARLNVCDRIGT 306

Query: 304 PIAQKYYEEFVKTFGKPAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPTDL 363
             A+   +E     G       L+HYARL+E+++S E I + +ED  +    +R +    
Sbjct: 307 AGAEAERQELRDRAGGTVTSSFLYHYARLVEILASLEKIAEMVEDPNLQTGFLRSQAGVN 366

Query: 364 VGEGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEKYIKTPED 423
             E +G  EAPRGTL HH++ D  G I   NL++AT QNN AM+  V ++A+ YI+  E 
Sbjct: 367 CLEAIGVSEAPRGTLFHHYRVDSHGKIERVNLIIATGQNNLAMNRTVTQIAQHYIRHGE- 425

Query: 424 AKPHVLNHMEMVIRAYDPCLSCATHT 449
            +   LN +E  IR +DPCLSC+THT
Sbjct: 426 VQESFLNRVEAGIRCFDPCLSCSTHT 451