Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., hydrogenase large chain (RefSeq) from Shewanella amazonensis SB2B

 Score = 87.4 bits (215), Expect = 1e-21
 Identities = 126/575 (21%), Positives = 224/575 (38%), Gaps = 139/575 (24%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++ I+P+TR+EGH +V +  D++  +          RG E  L+GR   D  +   RICG
Sbjct: 4   RVVIDPITRIEGHLRVEVEVDENNVIQNAWSSSTLWRGIEVILKGRTPMDVGLIVQRICG 63

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHAL---HFGMLASPDLMFP 119
           +C  SH      AV+N  GVKIP  A  LR+LMQ +  +H H +   H   L   D++  
Sbjct: 64  VCTYSHYRCGTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSA 123

Query: 120 MTDD------------------------ALKRNVLGVASEN------------------- 136
           ++ D                        A++  V G   +                    
Sbjct: 124 LSADPAKAAQVALKYTDKPIAAGEGELRAVQERVKGFVEKGQLGPFANAYWGNGTYKFTP 183

Query: 137 ------MDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGG-------QSKPLTEEERDE 183
                 +     A+ ++++   ++   GG+  HP + VVGG        S    +E + +
Sbjct: 184 EQNLIALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQK 243

Query: 184 LLKMSENLVDTAERTLVVGKQ-------LLEGLKEQDLLELGYF------ESYHMGMVNN 230
              +++ +    +  +V+  +       +L G+  ++ L    F        ++ G++ N
Sbjct: 244 HAYVTDFIKRAYQADIVMAAEAFGTEPSVLGGVNVKNFLATDDFVLADGEYMFNGGVIMN 303

Query: 231 GAQDIYEGKIRVVNPE-------------GKIEYEYEPSEYLNYMS-------------- 263
           G  D+    +  +NP+                ++ Y+ +   NY                
Sbjct: 304 G--DL--AGVSDINPDLIAEDVTHAWYSADNAQHPYDGTTVPNYTGFVERDTVYGKLPTL 359

Query: 264 EGVRPYSYLKFPYL----TEKGPVDGVYRVNTLSRLNVCDRMPTPIAQK--YYEEFVKTF 317
           +G   YS++K P       E GP+  +          V D +   +A+     E    T 
Sbjct: 360 DGDGKYSWVKSPRYNGEPVEVGPLSSLLVSYARGNKVVVDAVNGLLARTGLPVEALFTTL 419

Query: 318 GKPAHHPMLFHYARLIE-LISSAELIRKFLEDDAIVGTDIRVEPTDLVGE---------G 367
           G+ A        AR+++ +I + E +R F   DA++ T+I+ +    V           G
Sbjct: 420 GRTA--------ARMLQTVIVADEGLRTF---DALL-TNIQSDEATYVKPEIDANKEYVG 467

Query: 368 VGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMD----IGVQKVAEKYIKTPED 423
              +EAPRG L H  +    G + +   VV T  N    D    IG  + +   +K  + 
Sbjct: 468 HAMIEAPRGMLSHWIRIKG-GKVENYQAVVPTTWNAGPKDANGKIGPYEASLIGLKLEDP 526

Query: 424 AKPHVLNHMEMVIRAYDPCLSCATHTIDGKERMLS 458
            KP     +  +I ++DPC++C+ H +D K   LS
Sbjct: 527 TKP---LEVIRIIHSFDPCMACSVHVMDFKGASLS 558