Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 361 a.a., NADH dehydrogenase (ubiquinone) (NCBI) from Rhodospirillum rubrum S1H

 Score = 50.1 bits (118), Expect = 1e-10
 Identities = 39/162 (24%), Positives = 66/162 (40%), Gaps = 19/162 (11%)

Query: 39  RGFEKFLEGRYIEDAPVFTPRICGICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQA 98
           RG E     R I    V T R+C +C  SH      A++++ G+ +P  A  LR +  + 
Sbjct: 42  RGIEYLATKRNIYQNIVLTERVCSLCSNSHPQTYCMALESITGMVVPPRAQYLRVIADET 101

Query: 99  SNVHSHALHFGMLASPDLMFPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVG 158
             V SH  +  +LA               +++G  S  M V++     R+I Q   + V 
Sbjct: 102 KRVASHMFNVAILA---------------HIVGFDSLFMHVME----AREIMQDTKEAVF 142

Query: 159 GRAIHPVTAVVGGQSKPLTEEERDELLKMSENLVDTAERTLV 200
           G  +      +GG    L ++ RD  +   + L  T    ++
Sbjct: 143 GNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEII 184



 Score = 39.3 bits (90), Expect = 2e-07
 Identities = 29/112 (25%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 334 ELISSAELIRKFLEDDAIVGTDIRVEPTDLVGEGVGCLEAPRGTLVHHFKTDDKGIITDA 393
           E ++S  LIR+ L D     T     P    GE V   EAPRG L+++ KT+        
Sbjct: 261 EALTSIGLIRQCLRDMPDGPTKAGPVPPIPAGEAVAKTEAPRGELIYYLKTNGTDRPERL 320

Query: 394 NLVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPHVLNHMEMVIRAYDPCLSC 445
              V T  N  A+++ +                  ++ + +++ + DPC+SC
Sbjct: 321 KWRVPTYMNWDALNVMMAGAR--------------ISDIPLIVNSIDPCISC 358