Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 596 a.a., Nickel-dependent hydrogenase, large subunit (NCBI) from Rhodospirillum rubrum S1H

 Score = 94.7 bits (234), Expect = 7e-24
 Identities = 45/113 (39%), Positives = 69/113 (61%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++ ++PVTR+EGH ++ L+ D++  +          RG E  L+GR   DA  FT RICG
Sbjct: 17  RVVVDPVTRIEGHLRIELNVDEANVIRNAVSTGTMWRGIELILKGRDPRDAWAFTQRICG 76

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPD 115
           +C  +H L S RA++N  G++IP+ A+ +RN+MQ    VH H +HF  L + D
Sbjct: 77  VCTGTHALTSVRAIENTLGIQIPENANSIRNIMQLCLQVHDHLVHFYHLHALD 129



 Score = 44.7 bits (104), Expect = 9e-09
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 8/89 (8%)

Query: 366 EGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQN----NPAMDIGVQKVAEKYIKTP 421
           +GVG  EAPRG L H  + +  G I +   VV T  N    +PA  IG  + A   + TP
Sbjct: 499 KGVGFTEAPRGALAHWVQIE-AGKIANYQCVVPTTWNGSPRDPAGAIGAFEAA--LLDTP 555

Query: 422 EDAKPHVLNHMEMVIRAYDPCLSCATHTI 450
             A P     +   + ++DPCL+C+TH +
Sbjct: 556 L-ADPQQPLEVLRTLHSFDPCLACSTHIL 583