Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 561 a.a., NADH-ubiquinone oxidoreductase (NCBI) from Rhodospirillum rubrum S1H

 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)

Query: 39  RGFEKFLEGRY-IEDAPVFTPRICGICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQ 97
           RG EK  +        P    R+CGIC   H+     AV++  G++IP  A  +R++M +
Sbjct: 213 RGIEKLSDTVLDYNQVPFMAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMME 272

Query: 98  ASNVHSHALHFGM 110
              +HSH L  G+
Sbjct: 273 LERLHSHLLWLGL 285



 Score = 34.7 bits (78), Expect = 8e-06
 Identities = 38/158 (24%), Positives = 64/158 (40%), Gaps = 28/158 (17%)

Query: 310 YEEFVKTFGKPAHHPMLFHYARLI----ELISSAELIRKFL----EDDAIVGTDIRVEPT 361
           Y  F     KP+ H     +AR +    E+ SS +LI++ +    E + + G      P 
Sbjct: 404 YAAFPDLDFKPSFHEGGDIWARTLVRVDEVRSSVDLIKQMITKLPEGEIMAGFG----PI 459

Query: 362 DLVGEGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEKYIKTP 421
               EG G  EAPRG  VH+ +T          +  AT     A+ + ++ ++       
Sbjct: 460 PAWREGYGIAEAPRGECVHYVQTGKDNRPYRWRVRAATYPQLQAVPLMLKGMS------- 512

Query: 422 EDAKPHVLNHMEMVIRAYDPCLSCATH--TIDGKERML 457
                  +    ++I + DPC SC     T+D K + +
Sbjct: 513 -------IGDFPIIIGSIDPCFSCTERVLTVDTKSKAI 543