Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 574 a.a., hydrogenase large subunit from Rahnella sp. WP5

 Score = 61.2 bits (147), Expect = 9e-14
 Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 3/98 (3%)

Query: 14  GHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRY-IEDAPVFTPRICGICQVSHNLAS 72
           GH ++ +  +D    D   F+V   RG EK  E R    +    + R+CGIC  +H++A 
Sbjct: 201 GHFRLFVDGEDIIDADYRLFYVH--RGMEKLAETRMGYNEVTFLSDRVCGICGFTHSVAY 258

Query: 73  ARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGM 110
             +V+N  G+ +P+ A M+R+++ +   +HSH L+ G+
Sbjct: 259 TSSVENAMGIVVPERAQMIRSILLEVERLHSHLLNLGL 296



 Score = 30.8 bits (68), Expect = 1e-04
 Identities = 32/140 (22%), Positives = 60/140 (42%), Gaps = 25/140 (17%)

Query: 331 RLIELISSAELIRKFLEDDAIVGTDIRVEPTDLVGE--GVGCLEAPRGTLVHHFKTDDKG 388
           R+ E+ ++  +I   L+  ++ G  + VE  + +     +G  EAPRG  +H   T D  
Sbjct: 440 RIHEVFNALNMIEFGLQ--SLPGGPLAVEGFNYIPHRFALGFAEAPRGDDIHWSMTGDNQ 497

Query: 389 IITDANLVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPHVLNHMEMVIRAYDPCLSCATH 448
            +       AT  N P +         +Y+      + + ++   ++I + DPC SC   
Sbjct: 498 KLFRWRCRAATYANWPTL---------RYM-----LRGNTVSDAPLIIGSLDPCYSCT-- 541

Query: 449 TIDGKERMLSMDVYKGGKLI 468
                +RM  +DV K   ++
Sbjct: 542 -----DRMTVVDVRKKTSIV 556