Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 568 a.a., nickel-dependent hydrogenase, large subunit (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (257), Expect = 2e-26
 Identities = 128/563 (22%), Positives = 222/563 (39%), Gaps = 125/563 (22%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++ I+P+TR+EGH ++ +  D++  + K        RG E  L+GR   D  +   RICG
Sbjct: 4   RVVIDPITRIEGHLRIEVEVDENNVVQKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICG 63

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLAS---PDLMFP 119
           +C  SH      AV+N  GVKIP  A  LR+LMQ +  +H H +HF  L      D++  
Sbjct: 64  VCTYSHYRCGTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSA 123

Query: 120 MTDD-------ALK--RNVLGVASENMDVVKDAI-------------------------- 144
           ++ D       ALK   N +      +  V++ +                          
Sbjct: 124 LSADPAAAAQVALKYTHNPIAAGEGELRAVQERVKGFVETGKLGPFANAYWGNGTYKFTP 183

Query: 145 --------------SMRKIGQTIIQKVGGRAIHPVTAVVGGQS------KPLTEEERDEL 184
                          ++++   ++   GG+  HP + VVGG +       P   +E  + 
Sbjct: 184 EQNLIALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQK 243

Query: 185 LKMSENLVDTAERTLVV--------GKQLLEGLKEQDLLELGYF------ESYHMGMVNN 230
             +  + ++ A +  +V           +L G+  ++ L    F        +  G++ N
Sbjct: 244 HAIVADFINRAYKADIVMAAEAFGGEPSVLGGVNVKNFLATNDFVLADGQYMFDQGVIMN 303

Query: 231 GAQDIYEGKIRVVNPE-------------GKIEYEYEPSEYLNYMSEGVRPYSYLKFPYL 277
           G  D+    +  +NP+              + ++ YE +   NY     R   Y K P L
Sbjct: 304 G--DL--ANVTDINPDLIKEDVSHAWYDASEPQHPYEGTTIPNYTGFVERDTVYGKLPTL 359

Query: 278 TEKGPVDGV---------YRVNTLSRLNVCDRMPTPIAQKYYEEFVKTFGKPAHHPMLF- 327
              G    V           V  LS L V       +  +     ++  G P     LF 
Sbjct: 360 DGDGKYSWVKSPRYQGEPVEVGPLSSLLVSYARGNKVVVEAVNGLLEATGLPVE--ALFT 417

Query: 328 ----HYARLIELISSAE--------LIRKFLEDDAIVGTDIRVEPT-DLVGEGVGCLEAP 374
                 AR+++ +  AE        LI   L D+A       ++P+ + VG  +  +EAP
Sbjct: 418 TLGRTAARMLQTVIVAEQGLKTFDALINNLLVDEATY-VKPEIDPSKEYVGHAM--IEAP 474

Query: 375 RGTLVHHFKTDDKGIITDANLVVATVQNNPAMD----IGVQKVAEKYIKTPEDAKPHVLN 430
           RG L H  +  + G++ +   VV T  N   +D    +G  + +   +K  +  KP    
Sbjct: 475 RGMLSHWIRIKN-GLVENYQAVVPTTWNAGPVDAAGKVGPYEASLLGLKLEDPTKP---L 530

Query: 431 HMEMVIRAYDPCLSCATHTIDGK 453
            +  +I ++DPC++C+ H +D K
Sbjct: 531 EVIRIIHSFDPCMACSVHVMDYK 553