Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 488 a.a., nickel-dependent hydrogenase large subunit (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  132 bits (331), Expect = 3e-35
 Identities = 133/486 (27%), Positives = 213/486 (43%), Gaps = 64/486 (13%)

Query: 4   LSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICGI 63
           ++I+PV+R+EGH K  ++ ++   +D         RGFE  L GR   DA     RICG+
Sbjct: 19  IAIDPVSRIEGHLKAEVTVENGVVVD-ARLSGGMYRGFETILRGRDPRDASQIVQRICGV 77

Query: 64  CQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLM------ 117
           C  +H+ AS  A+DN F VK+P    + RNL   A+ + SH LHF  LA+ D +      
Sbjct: 78  CPTAHSTASCMALDNAFKVKVPTNGRLTRNLTFGANYLQSHILHFYHLAALDFVQGPDSA 137

Query: 118 -----FPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQ 172
                F   D  L +++   A   +D   +A+ +R+I   ++   GGR  H    VVGG 
Sbjct: 138 PFVPRFAKPDLRLPKDINAAA---VDQYLEALEVRRICHEMVAMFGGRMPHVQGQVVGGT 194

Query: 173 SKPLTEEERDELLKMSENLVDTAERTLVVGKQLLEGLKEQDLLEL--GYFESYHMGM--V 228
           ++  T+E   E     + + +  E+  V     + G   +DL +   GY      G   +
Sbjct: 195 TEIPTKEALVEYAARFKKVREFVEKKYVPVAYTV-GAAYKDLFKFGQGYKNCISFGAFPL 253

Query: 229 NNGAQDIY-------EGKIRVVNPEGKIEYEYEPSEYLNYMSEGVR-------------- 267
           N+   +++       +GK +  +P  K+  EY    + +  + G+               
Sbjct: 254 NDAMTELHLKRGVYIDGKDQPFDP--KLIKEYVKYSWFDDATTGLHFSQGKTVPAPNKAG 311

Query: 268 PYSYLKFPYLTEKGPVDGVYRVNTLSRLNVCDRMPTPIAQKYYEEFVKTFGK-------- 319
            YS++K P    K    G      ++R+ + +   +P+ QK  ++  K   K        
Sbjct: 312 AYSFVKAPRYNGKAVESG-----PVARMWITNPELSPVGQKLLKDLFKLNAKRFRDLGDE 366

Query: 320 PAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPTDLVGEGVGCLEAPRGTLV 379
            A   M  H AR  E       I ++L++                 EGVG  EAPRG+LV
Sbjct: 367 AAFSVMGRHVARAEETYYMLSAIERWLKEVKAGEETFAAAEIPASSEGVGFTEAPRGSLV 426

Query: 380 HHFKTDDKGIITDANLVVATVQN-NPAMDIG-VQKVAEKYIKTPEDAKPHVLN--HMEMV 435
           H+    D+  I +  +V AT+ N NP  D G +  V    + TP    P + N  ++  V
Sbjct: 427 HYINIKDQK-IDNYQIVSATLWNCNPRDDSGQLGPVERALVGTP---VPDISNPVNVARV 482

Query: 436 IRAYDP 441
           IRA+DP
Sbjct: 483 IRAFDP 488