Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis JJ

 Score = 58.9 bits (141), Expect = 3e-13
 Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 3/109 (2%)

Query: 3   KLSIEPV--TRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRI 60
           +++I PV  T +E H ++ L  +D    D      V  RG E+ +EG  +E A +   +I
Sbjct: 5   EIAIGPVHSTMLEPH-RLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKI 63

Query: 61  CGICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFG 109
           CGIC   H  ++AR V+    ++IP+ A+ +R ++++   +HSH L FG
Sbjct: 64  CGICSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFG 112



 Score = 37.4 bits (85), Expect = 9e-07
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 21/129 (16%)

Query: 331 RLIELISSAELIRKFLEDDAIVGT-DIRV-EPTDLVGE--GVGCL-EAPRGTLVHHFKTD 385
           R  E + S ++IR+ L  DA+  T D R+  P   + E   + C  EA RG   + +  D
Sbjct: 259 RFYECLESVKIIRQAL--DALKDTADKRIYNPNYELHEFKPINCYTEAQRGEQYYSYGLD 316

Query: 386 DKGIITDANLVVATVQNNPAMDIGVQKVAEKYIKTPEDAKPHVLNHMEMVIRAYDPCLSC 445
           D+G++  A +   T  N  AM+              +  K + ++  E++I + DPC +C
Sbjct: 317 DEGLVRQAKIRTPTATNLGAME--------------DIVKGYHVSDAELIIASCDPCFTC 362

Query: 446 ATHTIDGKE 454
               +  KE
Sbjct: 363 TDRLMVLKE 371