Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 414 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis JJ

 Score =  148 bits (373), Expect = 4e-40
 Identities = 128/454 (28%), Positives = 196/454 (43%), Gaps = 66/454 (14%)

Query: 4   LSIEPVTRVEGHGKVTLSFDDSGKLDKVNF-HVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++I P TR EGH K+ L+ DD G + K  + +   VRGFE  L+G+     P+   RICG
Sbjct: 5   VTISPTTRHEGHAKLVLNVDDEGIVTKAFYPNTTPVRGFETMLQGKTAAFGPIAVMRICG 64

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTD 122
           ICQ +H +AS  A++N   ++IPK   +LR L+   + +HSH LH  ++          D
Sbjct: 65  ICQATHGIASCEAIENAIDMEIPKDGMILRELLGLGNRMHSHPLHHLLI---------VD 115

Query: 123 DALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPLTEEERD 182
           D LK    G     ++ +K    MRK GQ ++   GG  IHP   +VGG    +TE  + 
Sbjct: 116 DFLKPEEAGTL--RVEGIKLIQRMRKAGQMVVDITGGEGIHPPNLMVGGMRTNITERAKS 173

Query: 183 ELLKMSENLVDTAERTLVVGKQLLEG-LKEQDLLELGYFESYHMGMVNNGAQDIYEGKIR 241
           +L              L V + L+E  L E  + +LG     ++      A D   G   
Sbjct: 174 KLYYACREYEKDCNAMLEVLEMLMERYLDEIGIPDLGKHNLPYI------ATDSTFGNRD 227

Query: 242 VVNPEGKIEYEYEPSEYLNYMSEGVRPYSYLKFPYLTEKGPVDGVYRVNTLSRLNVCDRM 301
            +N +   E    P++        +   +  + P+     P +G  R   +         
Sbjct: 228 AINWKDVTEV---PAQRYYADFPDIAQTATNQIPFY-RGNPAEGGPRARMIK-------- 275

Query: 302 PTPIAQKYYEEFVKTFGKPAHHPMLFHYARLIELISSAELIRKFLE--DDAIVGTDIRVE 359
                   Y  F     KPA   M  + AR +E   + E +++ LE  D+  +   +R  
Sbjct: 276 --------YGNF-----KPAGGAMDLNLARAME---NFEAVKRSLELIDELNINGTVREV 319

Query: 360 PTDLVGE---GVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVAEK 416
           P     +   G+G  EAPR T  H  K    G I   N++ A+  N PA++  ++    K
Sbjct: 320 PNFYNAKEEFGIGVHEAPRATNTHMAKMGKDGRIEKYNIIAASTWNFPAVEKAIEGYHHK 379

Query: 417 YIKTPEDAKPHVLNHMEMVIRAYDPCLSCATHTI 450
           Y               E+++RAYD   SCATH I
Sbjct: 380 Y--------------AEVIMRAYDIUASCATHVI 399