Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis JJ

 Score =  155 bits (392), Expect = 2e-42
 Identities = 132/456 (28%), Positives = 193/456 (42%), Gaps = 74/456 (16%)

Query: 4   LSIEPVTRVEGHGKVTLSFDDSGKLDKVNF-HVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           + I P TR EGH K+ L  DD G ++K N+  V  VRGFEKFL G+  E AP+   R CG
Sbjct: 5   VEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVSRFCG 64

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTD 122
           IC ++H  +S  A+++  G+  PK   +LR L    + +HSH LH   L +PD +     
Sbjct: 65  ICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLH-EFLIAPDFI----- 118

Query: 123 DALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVGGQSKPLTEEERD 182
                      ++ ++ +K    MRK GQ I+  +GG AIH     VGG  K +TE    
Sbjct: 119 ---------PEADRVEYIKRIQEMRKTGQYIVDTIGGEAIHAPNIKVGGMLKNITENAAS 169

Query: 183 ELLKMSENLVDTAERTLVVGKQLLEGLKEQDLLELGYFESYH-MGMVNNGAQDIYEGKIR 241
           ++          A+  +     + E     D  E+     YH  G +   A D   G   
Sbjct: 170 KIYYKCREYEKLAKEHVEYLIPIFESNMLADGTEIPEKLGYHDFGYI---ATDATYGNRE 226

Query: 242 VVNPEGKIEYEYEPSEYLNYMSEGVRPYSYLKFPYLTEKGPVDGVYRVNTLSRLN--VCD 299
            ++    +EY                       PY   +  V  V    T+ R N  + +
Sbjct: 227 NIDQSKVVEYT----------------------PYDVYEKDV-AVQACTTIPRYNGRLME 263

Query: 300 RMPTPIAQKYYEEFVKTFGKPAHH-----PMLFHYARLIELISSAELIRKFLEDDAIVGT 354
             P     K+++   K  G  A H       + H  R +E+I   ++  K   ++ I+G 
Sbjct: 264 VGPRARFAKFHD--FKNKGAMAIHIARAYENVVHVKRAMEIIDELDVNGKTRSNEPILGD 321

Query: 355 DIRVEPTDLVGEGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQKVA 414
             ++        G+G  EA RG   H    D KG IT  N +VAT  N P +    +   
Sbjct: 322 GEKI--------GLGVHEAARGHNTHQAAIDAKGRITYYNAIVATTWNIPLIGKATEGTH 373

Query: 415 EKYIKTPEDAKPHVLNHMEMVIRAYDPCLSCATHTI 450
            K+               E V+RAYDPC+SCATH I
Sbjct: 374 YKF--------------AEHVVRAYDPCVSCATHVI 395