Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., quinone-reactive Ni/Fe hydrogenase, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 126/566 (22%), Positives = 221/566 (39%), Gaps = 121/566 (21%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++ I+P+TR+EGH ++ +  D++  ++K        RG E  L+GR   D  +   RICG
Sbjct: 4   RVVIDPITRIEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICG 63

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLAS---PDLMFP 119
           +C  SH      AV+N  G++IP  A  LR+LM  +  +H H +HF  L      D++  
Sbjct: 64  VCTYSHYRCGTEAVENALGIQIPLNAKYLRSLMLTSLFMHDHIVHFYHLHGLDWVDVVSA 123

Query: 120 MTDDALKRNVLGVASENMDV-------------VKDAISMRKIG---------------- 150
           ++ D  K   + +   +  +             VK  +   K+G                
Sbjct: 124 LSADPAKAAQIALKYTDKPIAAGEGELRAVQERVKGFVETGKLGPFANAYWGNGTYKFTP 183

Query: 151 -QTII-----------QKV--------GGRAIHPVTAVVGG--------------QSKPL 176
            Q +I           Q+V        GG++ HP + VVGG              + K  
Sbjct: 184 EQNLIALSHYLKALEVQRVAAEMLAIFGGKSPHPQSLVVGGVTSVRDMLSPARLQEWKQK 243

Query: 177 TEEERDELLKMSENLVDTAERTLVVGKQLLEGLKEQDLLELGYF------ESYHMGMVNN 230
            E   D +L+  +  +  A         +L G+  ++ +    F        +  G++ N
Sbjct: 244 HEIVTDFILRAYQADIVMAAEAFGTEPSVLGGVNVKNFMATNDFVLANGEYLFDQGVIMN 303

Query: 231 G-------------AQDIYEGKIRVVNPEGKIEYEYEPSEYLNYMS-------------- 263
           G             A+D+         P    ++ Y+ +   NY                
Sbjct: 304 GDLAGVSDINPDLIAEDVSHAWYNADAP----QHPYDGTTIPNYTGFVERDTVYGKLPTL 359

Query: 264 EGVRPYSYLKFPYL----TEKGPVDGVYRVNTLSRLNVCDRMPTPIAQK--YYEEFVKTF 317
           +G   YS++K P       E GP+  +          V D +   +A+     E    T 
Sbjct: 360 DGDGKYSWVKSPRYQGEPVEVGPLSCLLVSYARGNKVVVDAVNALLARTGLPVEALFTTL 419

Query: 318 GKPAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPT-DLVGEGVGCLEAPRG 376
           G+ A   ML       E + + + +   ++ D        ++P+ + VG  +  +EAPRG
Sbjct: 420 GRTAAR-MLQTVIVAQEGLKTFDALLTNIQSDETTYVKPHIDPSKEYVGHAM--MEAPRG 476

Query: 377 TLVHHFKTDDKGIITDANLVVATVQNNPAMD----IGVQKVAEKYIKTPEDAKPHVLNHM 432
            L H  +  + G+I +   VV T  N   +D    IG  + +   +K  +  KP     +
Sbjct: 477 MLSHWIRIKN-GVIENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKP---LEV 532

Query: 433 EMVIRAYDPCLSCATHTIDGKERMLS 458
             +I ++DPC++C+ H +D K + LS
Sbjct: 533 IRIIHSFDPCMACSVHVMDFKGQALS 558