Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 601 a.a., NADH dehydrogenase I, C/D subunits (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 44.7 bits (104), Expect = 9e-09
 Identities = 37/143 (25%), Positives = 58/143 (40%), Gaps = 29/143 (20%)

Query: 39  RGFEKFLEGRYIEDAPVFTPRICGICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQA 98
           RG EK  E +       +T R+  +  V +NL    AV+ + G+K+P+  DM+R +M + 
Sbjct: 255 RGAEKMGERQSWHSYIPYTDRVEYLGGVMNNLPYVLAVEKLAGIKVPQRVDMIRVMMAEL 314

Query: 99  SNVHSHALHFGML-----ASPDLMFPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTI 153
             + SH L  G       A   + F  TD                        R+   TI
Sbjct: 315 FRIQSHLLFLGTYIQDVGAMTPVFFTFTD------------------------RQHIYTI 350

Query: 154 IQKVGGRAIHPVTAVVGGQSKPL 176
           I+ + G  +HP    +GG +  L
Sbjct: 351 IEAITGARMHPAWFRIGGVAHDL 373