Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 510 a.a., periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  147 bits (371), Expect = 8e-40
 Identities = 145/495 (29%), Positives = 232/495 (46%), Gaps = 60/495 (12%)

Query: 2   TKLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRIC 61
           T ++I+PVTR+EGH K  +  ++ GK+          RGFE  L GR   DA     RIC
Sbjct: 17  TTIAIDPVTRIEGHLKAEVVVEN-GKVVDARLSGGMYRGFETILRGRDPRDASQIVQRIC 75

Query: 62  GICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLM---- 117
           G+C  +H+ AS  A+D  FG K+P    + RNL+  A+ + SH LHF  L++ D +    
Sbjct: 76  GVCPTAHSTASVLALDEAFGAKVPNNGRITRNLIFGANYLQSHILHFYHLSAQDFVQGPD 135

Query: 118 -------FPMTDDALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVTAVVG 170
                  FP +D  L +    +    +D   +A+ +R+I   ++   GGR  H    VVG
Sbjct: 136 TAPFVPRFPKSDLRLSKE---LNKAGVDQYIEALEVRRICHEMVALFGGRMPHVQGQVVG 192

Query: 171 GQSKPLTEEERDELLKMSENLVDTAERTLVVGKQLLEGLKEQDLLEL--GYFESYHMG-- 226
           G ++  T+E+  E     + + D  E+  V     + G K +D+ ++  G+  +  +G  
Sbjct: 193 GATEIPTKEKLVEYAARFKKVRDFVEQKYVPVVYTI-GSKYKDMFKVGQGFKAALCVGAF 251

Query: 227 -MVNNGAQDIY------EGKIRVVNPEGKIEY-EY----EPSEYLNYMSEGVRP------ 268
            + N+G + ++      +GK    +P    EY +Y    E +  LNY      P      
Sbjct: 252 PLDNSGKKHLFMPGVYAKGKDMPFDPSKIKEYVKYSWFAEETTGLNYKEGKTIPAPDKAG 311

Query: 269 -YSYLKFPYLTEKGPVDGV-YRVNTLSRLNVCDRMPTPIAQKYYEEF-------VKTFGK 319
            YS++K P        DG+   V  L+R+ V +   +P+ +K  ++         +  G+
Sbjct: 312 AYSFVKAP------RYDGLSLEVGPLARMWVNNPELSPVGKKLLKDLFGISAKKFRDLGE 365

Query: 320 PAHHPML-FHYARLIELISSAELIRKFLEDDAIVGTDIRVEP-TDLVGEGVGCLEAPRGT 377
            A   ++  H AR  E       I  +L+ +   G D  V P      EG G  EAPRG+
Sbjct: 366 EAAFSLMGRHVARAEETYYMLGAIEGWLK-EIKAGEDTVVMPAVPASAEGTGFTEAPRGS 424

Query: 378 LVHHFKTDDKGIITDANLVVATVQN-NPAMDIGVQ-KVAEKYIKTPEDAKPHVLNHMEMV 435
           L+H+ K  D   I +  +V A++ N NP  D+G +  V E  I  P D   + +N +  +
Sbjct: 425 LLHYVKVKDSK-IDNYQIVSASLWNCNPRDDMGQRGAVEEALIGIPVDDIQNPVN-VARL 482

Query: 436 IRAYDPCLSCATHTI 450
           IRA+DP L CA H +
Sbjct: 483 IRAFDPULGCAVHVL 497