Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 549 a.a., periplasmic [NiFe] hydrogenase, large subunit, isozyme 2 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 69/216 (31%), Positives = 103/216 (47%), Gaps = 28/216 (12%)

Query: 4   LSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICGI 63
           ++I+P+TR+EGH K+ +   D GK+          RG E  ++GR  ED   +  R+CG+
Sbjct: 10  ITIDPITRIEGHLKIDVDVKD-GKVANAWSSAQLFRGIEMIVQGRPPEDVHHYVQRVCGV 68

Query: 64  CQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHALHFGMLASPDLMFPMTDD 123
           C  +H L S RAV+N  G+K P  A+++R L+    +VH H +HF  L S D  F M  D
Sbjct: 69  CTTTHALTSIRAVENAIGLKPPPAAELVRLLILSTLDVHDHLVHFYHLHSLD-FFDMA-D 126

Query: 124 ALKRNVLGVASENMDVVKDAISMRKIGQTIIQKVGGRAIHPVT-AVVGGQSKPLTEEERD 182
           ALK               DA++  K+      +V GR   P    +V G+ K   E  + 
Sbjct: 127 ALK--------------ADAVAAAKLA----SEVSGRETQPGDFFIVQGRLKKFVEGGQL 168

Query: 183 ELLKMSENLVD------TAERTLVVGKQLLEGLKEQ 212
             L  + +L        + E  L++    LE LK Q
Sbjct: 169 GWLNHAYSLGGHPAYRLSPEENLILATNYLEALKVQ 204



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 23/157 (14%)

Query: 311 EEFVKTFGKPAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPTDLV------ 364
           E    T G+ A        AR++E +     I  +L D   +   I+  P ++       
Sbjct: 402 ENMFSTMGRTA--------ARMVECVVLMNRIEGWLND---LEARIKAGPVEIFKPWKMP 450

Query: 365 --GEGVGCLEAPRGTLVHHFKTDDKGIITDANLVVATVQNNPAMDIGVQK-VAEKYIKTP 421
              +GVG     RG L H  + +         +V +T    P  + G    V E  +  P
Sbjct: 451 DKAKGVGFCAVTRGGLSHWIRIEGGKTANYQMVVPSTWNLGPRCEAGKPSPVEESLMGNP 510

Query: 422 E-DAKPHVLNHMEMVIRAYDPCLSCATHTIDGKERML 457
             DA+  V   +   + ++DPCL+CA H I   +R +
Sbjct: 511 VLDAERPV--EVLRTVHSFDPCLACAVHLIHAGDRQV 545