Pairwise Alignments

Query, 471 a.a., Ni/Fe hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., nickel-dependent hydrogenase, large subunit (RefSeq) from Shewanella sp. ANA-3

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 122/564 (21%), Positives = 225/564 (39%), Gaps = 117/564 (20%)

Query: 3   KLSIEPVTRVEGHGKVTLSFDDSGKLDKVNFHVVEVRGFEKFLEGRYIEDAPVFTPRICG 62
           ++ I+P+TR+EGH ++ +  D++  ++K        RG E  L+GR   D  +   RICG
Sbjct: 4   RVVIDPITRIEGHLRIEVEVDENNVINKAWSSSTLWRGIEVILKGRTPMDVGLIVQRICG 63

Query: 63  ICQVSHNLASARAVDNVFGVKIPKTADMLRNLMQQASNVHSHAL---HFGMLASPDLMFP 119
           +C  SH      AV+N  G++IP  A  LR+LMQ +  +H H +   H   L   D++  
Sbjct: 64  VCTYSHYRCGTEAVENALGIQIPLNAKYLRSLMQTSLYMHDHIVHFYHLHGLDWVDVVSA 123

Query: 120 MTDD------------------------ALKRNVLGVAS--------------------- 134
           ++ D                        A++  V G                        
Sbjct: 124 LSADPAKAAQVALKYTDKPIAAGEGELRAVQERVKGFVETGKLGPFANAYWGNGTYKFTP 183

Query: 135 -ENMDVVKD---AISMRKIGQTIIQKVGGRAIHPVTAVVGG-------QSKPLTEEERDE 183
            +N+  +     A+ ++++   ++   GG+  HP + VVGG        S    +E + +
Sbjct: 184 EQNLIALSHYLKALEVQRVAAEMLAIFGGKQPHPQSLVVGGVTSVRDMLSPARLQEWKQK 243

Query: 184 LLKMSENLVDTAERTLVVGKQLLEGLKEQDLL---ELGYFESYHMGMVNNGAQDIYEGKI 240
              +++ ++   +  +V+  +   G  E  +L    +  F + +  ++ NG     +G I
Sbjct: 244 HAIVTDFILRAYQADIVMAAEAFGG--EASVLGGVNVKNFMATNDFVLANGEYLFDQGVI 301

Query: 241 RV--------VNPE-------------GKIEYEYEPSEYLNYMS--------------EG 265
                     +NPE                ++ Y+ +   NY                +G
Sbjct: 302 MKGDLAGVSDINPELIAEDVSHAWYSADAPQHPYDGTTIPNYTGFVERDTVYGKLPTLDG 361

Query: 266 VRPYSYLKFPYL----TEKGPVDGVYRVNTLSRLNVCDRMPTPIAQK--YYEEFVKTFGK 319
              YS++K P       E GP+  +          V D +   +A+     E    T G+
Sbjct: 362 DGKYSWVKSPRYQGEPVEVGPLSCLLVSYARGNKVVVDAVNALLARTGLPVEALFTTLGR 421

Query: 320 PAHHPMLFHYARLIELISSAELIRKFLEDDAIVGTDIRVEPT-DLVGEGVGCLEAPRGTL 378
            A   ML       E + + + +   ++ D        ++P+ + VG  +  +EAPRG L
Sbjct: 422 TAAR-MLQTVIVAQEGLKTFDALLTNIQSDETTYVKPHIDPSREYVGHAM--IEAPRGML 478

Query: 379 VHHFKTDDKGIITDANLVVATVQNNPAMD----IGVQKVAEKYIKTPEDAKPHVLNHMEM 434
            H  +  + G+I +   VV T  N   +D    IG  + +   +K  +  KP     +  
Sbjct: 479 SHWIRIKN-GVIENYQAVVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKP---LEVIR 534

Query: 435 VIRAYDPCLSCATHTIDGKERMLS 458
           +I ++DPC++C+ H +D K + LS
Sbjct: 535 IIHSFDPCMACSVHVMDFKGQALS 558