Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., hydrogenase large chain (RefSeq) from Shewanella amazonensis SB2B

 Score = 70.9 bits (172), Expect = 9e-17
 Identities = 37/109 (33%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 1   MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVS 60
           M + V I+P TR EGH ++ ++VD++ +++   + S T  RG E  L G+      + V 
Sbjct: 1   MSQRVVIDPITRIEGHLRVEVEVDENNVIQNA-WSSSTLWRGIEVILKGRTPMDVGLIVQ 59

Query: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLH 109
           R CG+C  +H     EA+E+A G+  P +   LR L      MH H +H
Sbjct: 60  RICGVCTYSHYRCGTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVH 108



 Score = 50.8 bits (120), Expect = 1e-10
 Identities = 56/236 (23%), Positives = 87/236 (36%), Gaps = 61/236 (25%)

Query: 200 DGTEIPEKLGYHDFGYIATDATYGNRENIDQSKVVEYTPYDVYEKDVAVQACTTIPRYNG 259
           DGT +P   G+     +  D  YG    +D      +                  PRYNG
Sbjct: 336 DGTTVPNYTGF-----VERDTVYGKLPTLDGDGKYSWVKS---------------PRYNG 375

Query: 260 RLMEVGPRARFAKFHDFKNKGAM-AIH--------------------IARAYENVVHVKR 298
             +EVGP +     +   NK  + A++                     AR  + V+    
Sbjct: 376 EPVEVGPLSSLLVSYARGNKVVVDAVNGLLARTGLPVEALFTTLGRTAARMLQTVIVADE 435

Query: 299 AMEIIDELDVNGK----TRSNEPILGDGEKIGLGVHEAARGHNTHQAAIDAKGRITYYNA 354
            +   D L  N +    T     I  + E +G  + EA RG  +H   I   G++  Y A
Sbjct: 436 GLRTFDALLTNIQSDEATYVKPEIDANKEYVGHAMIEAPRGMLSHWIRIKG-GKVENYQA 494

Query: 355 IVATTWNI--------------PLIG-KATEGTHYKFAEHVVRAYDPCVSCATHVI 395
           +V TTWN                LIG K  + T       ++ ++DPC++C+ HV+
Sbjct: 495 VVPTTWNAGPKDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACSVHVM 550