Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 568 a.a., nickel-dependent hydrogenase, large subunit (RefSeq) from Shewanella loihica PV-4

 Score = 75.1 bits (183), Expect = 5e-18
 Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 1/109 (0%)

Query: 1   MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVS 60
           M K V I+P TR EGH ++ ++VD++ +V+K  + S T  RG E  L G+      + V 
Sbjct: 1   MSKRVVIDPITRIEGHLRIEVEVDENNVVQKA-WSSSTLWRGIEVILKGRTPMDVGLIVQ 59

Query: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLH 109
           R CG+C  +H     EA+E+A G+  P +   LR L      MH H +H
Sbjct: 60  RICGVCTYSHYRCGTEAVENALGVKIPLNAKYLRSLMQTSLYMHDHIVH 108



 Score = 47.8 bits (112), Expect = 8e-10
 Identities = 55/240 (22%), Positives = 91/240 (37%), Gaps = 63/240 (26%)

Query: 200 DGTEIPEKLGYHDFGYIATDATYGNRENIDQSKVVEYTPYDVYEKDVAVQACTTIPRYNG 259
           +GT IP   G+     +  D  YG    +D      +                  PRY G
Sbjct: 336 EGTTIPNYTGF-----VERDTVYGKLPTLDGDGKYSWVKS---------------PRYQG 375

Query: 260 RLMEVGPRARFAKFHDFKNKGAM-AIH--------------------IARAYENVVHVKR 298
             +EVGP +     +   NK  + A++                     AR  + V+  ++
Sbjct: 376 EPVEVGPLSSLLVSYARGNKVVVEAVNGLLEATGLPVEALFTTLGRTAARMLQTVIVAEQ 435

Query: 299 AME----IIDELDVNGKTRSNEPILGDGEKIGLGVHEAARGHNTHQAAIDAKGRITYYNA 354
            ++    +I+ L V+  T     I    E +G  + EA RG  +H   I   G +  Y A
Sbjct: 436 GLKTFDALINNLLVDEATYVKPEIDPSKEYVGHAMIEAPRGMLSHWIRIK-NGLVENYQA 494

Query: 355 IVATTWNIPLIGKATEGTHYKFAE---------------HVVRAYDPCVSCATHVIAMDY 399
           +V TTWN   +  A +   Y+ +                 ++ ++DPC++C+ HV  MDY
Sbjct: 495 VVPTTWNAGPVDAAGKVGPYEASLLGLKLEDPTKPLEVIRIIHSFDPCMACSVHV--MDY 552