Pairwise Alignments

Query, 410 a.a., coenzyme F420 hydrogenase subunit alpha from Methanococcus maripaludis S2

Subject, 567 a.a., quinone-reactive Ni/Fe hydrogenase, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 1/109 (0%)

Query: 1   MGKTVEINPTTRHEGHTKLVLKVDDDGIVEKGNYLSVTPVRGFEKFLVGKVAEFAPIAVS 60
           M K V I+P TR EGH ++ ++VD++ ++ K  + S T  RG E  L G+      + V 
Sbjct: 1   MSKRVVIDPITRIEGHLRIEVEVDENNVINKA-WSSSTLWRGIEVILKGRTPMDVGLIVQ 59

Query: 61  RFCGICPIAHATSSVEAIEDACGITPPKDGLLLRELTGLGNKMHSHPLH 109
           R CG+C  +H     EA+E+A GI  P +   LR L      MH H +H
Sbjct: 60  RICGVCTYSHYRCGTEAVENALGIQIPLNAKYLRSLMLTSLFMHDHIVH 108



 Score = 47.8 bits (112), Expect = 8e-10
 Identities = 59/247 (23%), Positives = 93/247 (37%), Gaps = 63/247 (25%)

Query: 200 DGTEIPEKLGYHDFGYIATDATYGNRENIDQSKVVEYTPYDVYEKDVAVQACTTIPRYNG 259
           DGT IP   G+     +  D  YG    +D      +                  PRY G
Sbjct: 336 DGTTIPNYTGF-----VERDTVYGKLPTLDGDGKYSWVKS---------------PRYQG 375

Query: 260 RLMEVGPRARFAKFHDFKNKGAM-AIHI--------------------ARAYENVVHVKR 298
             +EVGP +     +   NK  + A++                     AR  + V+  + 
Sbjct: 376 EPVEVGPLSCLLVSYARGNKVVVDAVNALLARTGLPVEALFTTLGRTAARMLQTVIVAQE 435

Query: 299 AMEIIDELDVN---GKTRSNEPILGDG-EKIGLGVHEAARGHNTHQAAIDAKGRITYYNA 354
            ++  D L  N    +T   +P +    E +G  + EA RG  +H   I   G I  Y A
Sbjct: 436 GLKTFDALLTNIQSDETTYVKPHIDPSKEYVGHAMMEAPRGMLSHWIRIK-NGVIENYQA 494

Query: 355 IVATTWNI--------------PLIG-KATEGTHYKFAEHVVRAYDPCVSCATHVIAMDY 399
           +V TTWN                LIG K  + T       ++ ++DPC++C+ HV  MD+
Sbjct: 495 VVPTTWNAGPVDANGKIGPYEASLIGLKLEDPTKPLEVIRIIHSFDPCMACSVHV--MDF 552

Query: 400 DNKIVDK 406
             + + +
Sbjct: 553 KGQALSE 559