Pairwise Alignments

Query, 242 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 156 a.a., NADH-quinone oxidoreductase subunit B family protein from Methanococcus maripaludis JJ

 Score = 52.8 bits (125), Expect = 4e-12
 Identities = 39/152 (25%), Positives = 59/152 (38%), Gaps = 32/152 (21%)

Query: 2   VRVAHIHMSGCTGCLISLTDTYEKLLDILGAVELVYALTLADEKTEITETDDKILIERKI 61
           + V  ++  GC GC I +        DI                      +   +     
Sbjct: 11  INVCLVNTGGCNGCDIEIVSCLAPRYDI----------------------EQYGIYVHNN 48

Query: 62  PENIDIALVEGSVCLDDHHSVEDILTTRKNSKIVVALGACAASGGVTRFGRGGQMSQPSH 121
           P   D+ +V G V       + +I       KIV+A+GACA SGG+ + G         H
Sbjct: 49  PREADVLVVTGPVTGAWEKRLLEIYEKTPEPKIVIAVGACALSGGIFKEGH-------IH 101

Query: 122 SSFVPIGDVIKVDLALPGCPPSTESIVNLIMA 153
               P+  VI VD  LPGCPP    I++ +++
Sbjct: 102 G---PVDKVIPVDAKLPGCPPRPSEIISAVVS 130