Pairwise Alignments

Query, 242 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 45.1 bits (105), Expect = 2e-09
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 184 VIDQSLCMGCGTCAAACQVKAIEMVEGK---PDIMTEFCIKCGICGAQCP 230
           ++D+  C+GC  C  AC V    ++  +   P I  E+C++CG+C   CP
Sbjct: 277 IVDEEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACP 326



 Score = 42.7 bits (99), Expect = 1e-08
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 180 VIKNVIDQSLCMGCGTCAAACQVKAIEMVE-GKPDIMTEFCIKCGICGAQCP 230
           +I  +ID+ +C+ CGTC  AC V AI     G  +I    C+ C  C   CP
Sbjct: 118 IINLLIDEEICVSCGTCENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCP 169



 Score = 36.6 bits (83), Expect = 8e-07
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 15/62 (24%)

Query: 184 VIDQSLCMGCGTCAAACQVKAIEM----VEGK------PDIMT-----EFCIKCGICGAQ 228
           V D   C+ CG C  +C    +EM     E K      P I+      E C+ CG C   
Sbjct: 78  VFDAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENA 137

Query: 229 CP 230
           CP
Sbjct: 138 CP 139



 Score = 34.7 bits (78), Expect = 3e-06
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 179 DVIKNV--IDQSLCMGCGTCAAACQVKAIEMVEGKPDIMTEFCIKCGICGAQCP----RV 232
           DVI  +  I  SLC+GCG C   C   +I++      +    CIK G C   CP    R+
Sbjct: 208 DVIAEIPRIVPSLCIGCGNCVDVCP-GSIDLER----LKVTSCIKSGKCLEVCPTTAIRI 262

Query: 233 RFPELVQK 240
             PE + K
Sbjct: 263 GVPEKITK 270



 Score = 26.6 bits (57), Expect = 8e-04
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 185 IDQSLCMGCGTCAAACQVKAIEMVE 209
           I+   C+ CG C  AC V AI+ ++
Sbjct: 310 INPEYCVRCGLCQNACPVDAIDYLK 334



 Score = 26.2 bits (56), Expect = 0.001
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 40/98 (40%)

Query: 173 KDACGCDVIKN------VIDQSLCMGCGTCAAACQV-------------KAIEMVEGK-- 211
           ++AC  D I +       ID ++C+ C  C   C V             + IE+ +    
Sbjct: 135 ENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCPVENAIVTYDEPGLSEKIEIAQNTKF 194

Query: 212 -------------------PDIMTEFCIKCGICGAQCP 230
                              P I+   CI CG C   CP
Sbjct: 195 DRERLGSDFKEESDVIAEIPRIVPSLCIGCGNCVDVCP 232