Pairwise Alignments

Query, 242 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 317 a.a., periplasmic [NiFe] hydrogenase, small subunit, isozyme 1 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 45.4 bits (106), Expect = 1e-09
 Identities = 43/170 (25%), Positives = 76/170 (44%), Gaps = 25/170 (14%)

Query: 4   VAHIHMSGCTGCLISLTDTYEKLLD--ILGAVELVYALTLADEKTEITETDDKILIERKI 61
           V ++H + CTGC  S+   ++  LD  IL  + L Y  T+     +  E     L +   
Sbjct: 59  VVYLHNAECTGCSESVLRAFQPYLDELILDTISLDYHETIMAAAGDAAEA---ALHQAVA 115

Query: 62  PENIDIALVEGSVCLDD--------HHSVEDILT-TRKNSKIVVALGACAASGGVTRFGR 112
             +  I +VEG++   D        +H++  I +     +K V+A G CA  GGV     
Sbjct: 116 NPDGFICIVEGAIPTADNGIYGKVANHTMLSICSDIVPKAKAVIAYGTCATFGGV----- 170

Query: 113 GGQMSQPSHSSFVPIGDVIK----VDLALPGCPPSTESIVNLIMAALNGD 158
             Q ++P+ +    + D +K      + L GCPP+  ++V  ++  L  +
Sbjct: 171 --QAAKPNPTGAKGLNDALKHLGVNAINLAGCPPNPYNLVGTLVYYLKNN 218