Pairwise Alignments

Query, 242 a.a., coenzyme F420 hydrogenase subunit gamma from Methanococcus maripaludis S2

Subject, 317 a.a., periplasmic [NiFeSe] hydrogenase, small subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 50.4 bits (119), Expect = 4e-11
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 25/165 (15%)

Query: 11  GCTGCLISLTDT-YEKLLDILGAVELVYALTLADEKTEIT-ETDDKILIERKIPENID-- 66
           GCTGC ++L ++ +  + D+L  V     ++L    T +  E +  I   RK+ E     
Sbjct: 51  GCTGCSVTLLNSVHPSIADVLLKV-----ISLEFHPTVMAWEGEHAIEHMRKVAEKFKGK 105

Query: 67  -IALVEGSVCLD-----------DHHSVEDILTTRK---NSKIVVALGACAASGGVTRFG 111
              ++EGSV ++           +HH +  +   ++   N+  V+A+G CAA GG+    
Sbjct: 106 FFLVIEGSVPVEADGKYCIIGEANHHEISMVDALKEFGPNAAAVLAVGTCAAYGGIPA-A 164

Query: 112 RGGQMSQPSHSSFVPIGDVIKVDLALPGCPPSTESIVNLIMAALN 156
            G +    + S F+    +    + +PGCPP  + IV  ++ AL+
Sbjct: 165 EGSETGATAVSKFLGDNGIKTPVVNIPGCPPHPDWIVGTVVLALD 209