Pairwise Alignments

Query, 750 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

Subject, 416 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score = 57.8 bits (138), Expect = 1e-12
 Identities = 46/137 (33%), Positives = 62/137 (45%), Gaps = 36/137 (26%)

Query: 386 QSDFDSETGY-IINKSGTYVLDEDITCDM--GIRINASDVIISGWRHCLI---GTGFNMS 439
           + D+++   Y +IN+ GTYVL EDI      GI IN S+V++ G  H +I   G+     
Sbjct: 21  EMDYNNSDYYGVINEPGTYVLSEDIISPKWGGILINTSNVVLDGDNHHIICNNGSEETYG 80

Query: 440 AGIYTVNGTYENIEIKHILLKNWAVGLSAPYFFTDEPSSFVSNLAVSDCTFEFNNIGVGS 499
             IY      ENI IK+ + KNW    SA Y   D                         
Sbjct: 81  VDIYPDGHPIENITIKNAVFKNWT---SAIYSDDD------------------------- 112

Query: 500 AVSENITIESCEFINNT 516
             S+N+TI +CEF NNT
Sbjct: 113 --SKNVTIRNCEFENNT 127



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 32/120 (26%), Positives = 52/120 (43%), Gaps = 14/120 (11%)

Query: 627 NGTVTGCTFENNDYGITTSDGFIGKTIEVQENTISQNNFIENGCGLYLGGVNNWVYLNRF 686
           N T+    F+N    I + D    K + ++      N +  +  G+ +     + YLN  
Sbjct: 92  NITIKNAVFKNWTSAIYSDDD--SKNVTIRNCEFENNTYFLDSYGIEI-----YFYLNTI 144

Query: 687 ENNGQNINSISLFGNYFQSPEVTYEYGGETYKGRLGNYY--GEELGTSNAGIFDKPYGIE 744
             N Q+  S +       SP++ Y YGG  Y  RLGNYY   E   T + G++   Y ++
Sbjct: 145 HEN-QSAESYAPLA----SPKLVYTYGGTEYTYRLGNYYYGYEGTDTEDEGVYSGVYELD 199



 Score = 33.1 bits (74), Expect = 3e-05
 Identities = 59/244 (24%), Positives = 95/244 (38%), Gaps = 42/244 (17%)

Query: 155 YKNEENIGEIPSDASQIIISNCTNGQIKNLTLDENAVVIYIGDSSEITVKNCTIKPNIYH 214
           Y N +  G I    + ++  +  + +   + ++ + VV+  GD+  I   N + +    +
Sbjct: 24  YNNSDYYGVINEPGTYVLSEDIISPKWGGILINTSNVVLD-GDNHHIICNNGSEET---Y 79

Query: 215 DYDIYLINS--ENCNVTNNTFGISENTNFGVIKSYYSNNITISENTLNGMAMGFVFYKVT 272
             DIY      EN  + N  F   +N    +     S N+TI                  
Sbjct: 80  GVDIYPDGHPIENITIKNAVF---KNWTSAIYSDDDSKNVTIR----------------- 119

Query: 273 NSNIFENT-FENVYGVSIGEQGGVSDVYVYTNNFINSTRMDVENITFNSPANVSYLYNGA 331
           N     NT F + YG+         ++Y Y N  I+  +         SP  V Y Y G 
Sbjct: 120 NCEFENNTYFLDSYGI---------EIYFYLNT-IHENQSAESYAPLASPKLV-YTYGGT 168

Query: 332 VYSGIAGNYWNDYSEPEAIINNGIWSIPYSINELVNDSYPLVKEKPEDGKIHLT-QSDFD 390
            Y+   GNY+  Y E     + G++S  Y ++    D Y L+K  PE+  I  T   + D
Sbjct: 169 EYTYRLGNYYYGY-EGTDTEDEGVYSGVYELDS-TTDLYALIK-TPENYIITETLYPEVD 225

Query: 391 SETG 394
           SE G
Sbjct: 226 SEYG 229



 Score = 31.6 bits (70), Expect = 8e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 534 NADITNCTFESNSVGVVSEVD-ENITIESCEFINNTIEEGPFGAGI 578
           N  I N  F++ +  + S+ D +N+TI +CEF NNT     +G  I
Sbjct: 92  NITIKNAVFKNWTSAIYSDDDSKNVTIRNCEFENNTYFLDSYGIEI 137