Pairwise Alignments
Query, 750 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2
Subject, 644 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ
Score = 752 bits (1941), Expect = 0.0
Identities = 391/593 (65%), Positives = 452/593 (76%), Gaps = 50/593 (8%)
Query: 1 LELDPIDYNQINNSNYDTARNITSPGMYYLTENISNTNGIIISSDNVMLDGQGYFLNITG 60
+E DPIDYN +NNSNYDT RNITSPGMYYLTENIS+TNGIIISSDNV LDGQGYFLNITG
Sbjct: 15 VEPDPIDYNHMNNSNYDTVRNITSPGMYYLTENISSTNGIIISSDNVTLDGQGYFLNITG 74
Query: 61 NCGVNSTNHNNITVKNVKITTTSYSGIYFKNVNFPTVENNTINTTYLCSLWGSGYNFTVV 120
+ GVNST HNNITVKNVKITTTSYSGIYFKNVNFPTVENNTINTTYLCSLWGSGYNFTVV
Sbjct: 75 DYGVNSTYHNNITVKNVKITTTSYSGIYFKNVNFPTVENNTINTTYLCSLWGSGYNFTVV 134
Query: 121 NNSMSSGFGGNYGLEQLTTYKVVGNTINGKPIYFYKNEENIGEIPSDASQIIISNCTNGQ 180
NNSMSSGFGGNYGLEQLTTY VVGNT+NGKPIYFYK+ ENIGEIPSDA+QIIISNCTNGQ
Sbjct: 135 NNSMSSGFGGNYGLEQLTTYTVVGNTLNGKPIYFYKDTENIGEIPSDAAQIIISNCTNGQ 194
Query: 181 IKNLTLDENAVVIYIGDSSEITVKNCTIKPNIYHDYDIYLINSENCNVTNNTFGISENTN 240
IKNLTLDENAVVIYIGDSSEITV+NCTIKPNIY +Y +YLINSE+C++TNNTFGISENT+
Sbjct: 195 IKNLTLDENAVVIYIGDSSEITVENCTIKPNIYEEYALYLINSESCSITNNTFGISENTD 254
Query: 241 FGVIKSYYSNNITISENTLNGMAMGFVFYKVTNSNIFENTFENVYGVSIGEQGGVSDVYV 300
FGVI+S+YSNNITIS NTLN MA+GF Y +TNS+IFENTFEN+ G +I E+G VS+VYV
Sbjct: 255 FGVIRSHYSNNITISGNTLNEMAVGFRLYGITNSSIFENTFENIAGPTIVEEGSVSEVYV 314
Query: 301 YTNNFINSTRMDVENITFNSPANVSYLYNGAVYSGIAGNYWNDYSEPEAIINNGIWSIPY 360
Y NNFIN + V NITFNSP NVSY YNG VYSGIAGNYW+DY+E A IN+GIWSIP+
Sbjct: 315 YLNNFINCPIVLVTNITFNSPTNVSYAYNGTVYSGIAGNYWSDYNETNATINDGIWSIPH 374
Query: 361 SINELVNDSYPLV--------KEKPEDGKIHLTQSDF-DSETGYIINKSGTYVLDEDITC 411
+I ELVNDSYPLV +E P DG IHLTQ DF D+ETGYI ++SGTYVLDE+ITC
Sbjct: 375 TIMELVNDSYPLVEPANPETKEETPNDGLIHLTQDDFTDNETGYIASESGTYVLDENITC 434
Query: 412 DMGIRINASDVIISGWRHCLIGTGFNMS-----AGIYTVNGTYENIEIKHILLKNWAVGL 466
MGI INAS++ I G L G S GIY ++G +ENI +K++++ W G+
Sbjct: 435 AMGIGINASNITIDGNGFYLTGNVSERSEYWEDTGIYALSGNFENITVKNVVITEWYYGI 494
Query: 467 SAPYFFTDEPSSFVSNLAVSDCTFEFNN-IGVGSAVSENITIESCEFINNTIEGEIPFGA 525
+ P + D ++N +V +CTF N+ +G+G FG
Sbjct: 495 AVPLHWEDYE---ITNFSVINCTFLNNDWMGIGEM--------------------YVFG- 530
Query: 526 GILSFQNSNADITNCTFESNSVGVVSEVDENITIESCEFINNTIEEGPFGAGI 578
+ITN TF+++ GV+ ENI I EF N E G + G+
Sbjct: 531 ---------GEITNSTFKNSYYGVMLPYTENIIITGNEFSGN--EYGLYAGGV 572
Score = 79.3 bits (194), Expect = 6e-19
Identities = 109/396 (27%), Positives = 158/396 (39%), Gaps = 78/396 (19%)
Query: 383 HLTQSDFDSETGYIINKSGTYVLDEDITCDMGIRINASDVIISGWRHCLIGTGFNMSAGI 442
H+ S++D+ I G Y L E+I+ GI I++ +V + G + L TG
Sbjct: 24 HMNNSNYDTVRN--ITSPGMYYLTENISSTNGIIISSDNVTLDGQGYFLNITGD------ 75
Query: 443 YTVNGTYEN-IEIKHILLKNWAVGLSAPYFFTDE---------PSSFVSNLAVSDCTFEF 492
Y VN TY N I +K++ K S YF ++++ +L S F
Sbjct: 76 YGVNSTYHNNITVKNV--KITTTSYSGIYFKNVNFPTVENNTINTTYLCSLWGSGYNFTV 133
Query: 493 NNIGVGSAVSENITIESCE---FINNTIEG-------------EIPFGAGILSFQN-SNA 535
N + S N +E + NT+ G EIP A + N +N
Sbjct: 134 VNNSMSSGFGGNYGLEQLTTYTVVGNTLNGKPIYFYKDTENIGEIPSDAAQIIISNCTNG 193
Query: 536 DITNCTFESNSVGVVSEVDENITIESCEFINNTIEEGPFGAGILMQNFNADITNCTF--E 593
I N T + N+V + IT+E+C N EE A L+ + + ITN TF
Sbjct: 194 QIKNLTLDENAVVIYIGDSSEITVENCTIKPNIYEE---YALYLINSESCSITNNTFGIS 250
Query: 594 YNKRGAILEGEYITADSCEFINNTIGLIPAMF-YNGTVTGCTFENNDYGITTSDGFIGKT 652
N ++ Y +++ NT+ + F G FEN T + G T
Sbjct: 251 ENTDFGVIRSHY--SNNITISGNTLNEMAVGFRLYGITNSSIFEN------TFENIAGPT 302
Query: 653 IEVQENTISQNNFIENGCGLYLGGVNNWVYLNRFENNGQNINSISLFGNY-FQSP-EVTY 710
I V+E ++S+ +VYLN F N I L N F SP V+Y
Sbjct: 303 I-VEEGSVSE----------------VYVYLNNFIN-----CPIVLVTNITFNSPTNVSY 340
Query: 711 EYGGETYKGRLGNY---YGEELGTSNAGIFDKPYGI 743
Y G Y G GNY Y E T N GI+ P+ I
Sbjct: 341 AYNGTVYSGIAGNYWSDYNETNATINDGIWSIPHTI 376
Score = 68.2 bits (165), Expect = 1e-15
Identities = 117/443 (26%), Positives = 179/443 (40%), Gaps = 94/443 (21%)
Query: 7 DYNQINNSNYDTARNITSPGMYYLTENIS-----NTNGIIISSDNVMLDGQGYFLNITGN 61
D ++I N NI YL + S NT GI ++D ++ Y NIT
Sbjct: 211 DSSEITVENCTIKPNIYEEYALYLINSESCSITNNTFGISENTDFGVIRSH-YSNNIT-- 267
Query: 62 CGVNSTNHNNITVKNVKITTTSYSGIYFKNVNFPT-VENNTINTTYL-------CSL--- 110
N+ N + + IT +S F+N+ PT VE +++ Y+ C +
Sbjct: 268 ISGNTLNEMAVGFRLYGITNSSIFENTFENIAGPTIVEEGSVSEVYVYLNNFINCPIVLV 327
Query: 111 ----WGSGYNFTVV-NNSMSSGFGGNYGLEQLTTYKVVGNTI------------NGKPIY 153
+ S N + N ++ SG GNY + T + + I + P+
Sbjct: 328 TNITFNSPTNVSYAYNGTVYSGIAGNYWSDYNETNATINDGIWSIPHTIMELVNDSYPLV 387
Query: 154 FYKNEENIGEIPSDA----SQIIISNCTNGQIKN----LTLDENAV-VIYIG-DSSEITV 203
N E E P+D +Q ++ G I + LDEN + IG ++S IT+
Sbjct: 388 EPANPETKEETPNDGLIHLTQDDFTDNETGYIASESGTYVLDENITCAMGIGINASNITI 447
Query: 204 K--------NCTIKPNIYHDYDIYLI--NSENCNVTNNT-----FGIS--------ENTN 240
N + + + D IY + N EN V N +GI+ E TN
Sbjct: 448 DGNGFYLTGNVSERSEYWEDTGIYALSGNFENITVKNVVITEWYYGIAVPLHWEDYEITN 507
Query: 241 FGVIKSYYSNNI------------TISENTLNGMAMGFVFYKVTNSNIFENTFE-NVYGV 287
F VI + NN I+ +T G + N I N F N YG+
Sbjct: 508 FSVINCTFLNNDWMGIGEMYVFGGEITNSTFKNSYYGVMLPYTENIIITGNEFSGNEYGL 567
Query: 288 SIGEQGGVSDVYVYTNNFINSTR-MDVENIT---FNSPANVSYLYNGAVYSGIAGNYWND 343
G GV++ ++Y N F N+++ +D +++ F+SP V Y YNG VY G GNY
Sbjct: 568 YAG---GVNN-WIYLNKFENNSQNIDFRSLSGNYFHSPV-VKYEYNGKVYEGRVGNY--- 619
Query: 344 YSEPEAIINNGIWSIPYSINELV 366
Y E N GI+ PY I ++
Sbjct: 620 YGEELGTSNAGIYDKPYGIEAMI 642