Pairwise Alignments

Query, 750 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis S2

Subject, 426 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score = 66.6 bits (161), Expect = 2e-15
 Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 13/148 (8%)

Query: 397 INKSGTYVLDEDITC---DMGIRINASDVIISGWRHCLIG--TGFNMSAGI-YTVNGTYE 450
           IN+SGTYVL EDI       GI INAS+V++ G  H LIG  +  +   GI  + +G  E
Sbjct: 30  INESGTYVLSEDILALVNQSGILINASNVVLDGQNHQLIGNTSSEDFYCGIQVSSDGIIE 89

Query: 451 NIEIKHILLKNWAVGLSAPYFFTDEPSSFVSNLAVSDCTFEFNNIGVGSAVSENITIESC 510
           NI IK+ ++ NW  G        D     V N+ + +C FE N   +GS   E     + 
Sbjct: 90  NITIKNFVISNWFAG-------ADLTRGSVKNITIMNCEFEDNVFVIGSNAVEQYFYLNT 142

Query: 511 EFINNTIEGEIPFGAGILSFQNSNADIT 538
              N  +    P  +  L ++ +  + T
Sbjct: 143 IHENQYVRSNSPLTSPKLVYKYNGTEYT 170



 Score = 45.4 bits (106), Expect = 6e-09
 Identities = 52/192 (27%), Positives = 78/192 (40%), Gaps = 31/192 (16%)

Query: 566 NNTIEEGPFGAGILMQNFNADITNCTFEYNKRGAILEGEYITADSCEFINNTIGLIPAMF 625
           N TI E   G  +L ++  A +       N    +L+G+     + + I NT       F
Sbjct: 27  NMTINES--GTYVLSEDILALVNQSGILINASNVVLDGQ-----NHQLIGNTSS---EDF 76

Query: 626 Y-------NGTVTGCTFENNDYGITTSDGFIGKTI---EVQENTISQNNFIENGCGLYLG 675
           Y       +G +   T +N       S+ F G  +    V+  TI    F +N   +   
Sbjct: 77  YCGIQVSSDGIIENITIKN----FVISNWFAGADLTRGSVKNITIMNCEFEDNVFVIGSN 132

Query: 676 GVNNWVYLNRFENNGQNINSISLFGNYFQSPEVTYEYGGETYKGRLGNYYGEELG--TSN 733
            V  + YLN    N Q + S S       SP++ Y+Y G  Y  RLGNYY   +G  T +
Sbjct: 133 AVEQYFYLNTIHEN-QYVRSNSPL----TSPKLVYKYNGTEYTYRLGNYYEGYVGDETED 187

Query: 734 AGIFDKPYGIEG 745
            G++   Y I G
Sbjct: 188 EGVYSGVYEIYG 199



 Score = 41.2 bits (95), Expect = 1e-07
 Identities = 51/178 (28%), Positives = 75/178 (42%), Gaps = 25/178 (14%)

Query: 226 CNVTNNTFGISENTNFGVIKSYYSNNITISENTLNGMAMGFVFYKVTNSNIFENTFENVY 285
           C +  ++ GI EN     IK++  +N     +   G         + N    +N F  V 
Sbjct: 78  CGIQVSSDGIIENIT---IKNFVISNWFAGADLTRGSVKNIT---IMNCEFEDNVF--VI 129

Query: 286 GVSIGEQGGVSDVYVYTNNFINSTRMDVENITFNSPANVSYLYNGAVYSGIAGNYWNDY- 344
           G +  EQ      Y Y N  I+  +    N    SP  V Y YNG  Y+   GNY+  Y 
Sbjct: 130 GSNAVEQ------YFYLNT-IHENQYVRSNSPLTSPKLV-YKYNGTEYTYRLGNYYEGYV 181

Query: 345 ---SEPEAIINNGIWSIPYSINEL-VNDSYPLVKEKPEDGKI--HLTQSDFDSETGYI 396
              +E E +  +G++ I     E  V D YPL+ E PE+ ++   L    +D E G I
Sbjct: 182 GDETEDEGVY-SGVYEIYGEFEEFRVYDPYPLI-ETPENYEVLQILYPEVYDEEIGQI 237



 Score = 39.3 bits (90), Expect = 4e-07
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 15/77 (19%)

Query: 17 DTARNITSPGMYYLTENIS---NTNGIIISSDNVMLDGQGYFLNITGN-------CGVNS 66
          D    I   G Y L+E+I    N +GI+I++ NV+LDGQ +   + GN       CG+  
Sbjct: 25 DANMTINESGTYVLSEDILALVNQSGILINASNVVLDGQNH--QLIGNTSSEDFYCGIQV 82

Query: 67 TNH---NNITVKNVKIT 80
          ++     NIT+KN  I+
Sbjct: 83 SSDGIIENITIKNFVIS 99