Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 1028 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  282 bits (721), Expect = 4e-80
 Identities = 176/374 (47%), Positives = 226/374 (60%), Gaps = 51/374 (13%)

Query: 46   YGIQITASNVVLDG--NNNKLISNNSEGTGIYIRSNYEN--YTENVTIKNLNIENWSIGI 101
            YGI I   + ++D   ++N + +   E  GIYI    EN   + N  I N   + +++ +
Sbjct: 699  YGIYIY-DDPLIDSTISDNAVTTAGYEAYGIYIEYGAENSNISGNTVITN-GEDTYALYL 756

Query: 102  KIDGDVKNITIKNCEFENNEYFLKSYATEQY-FYLNTIHEN-QEVMSNSPLASPKLVYNY 159
                DV   +I    F + +Y +   ++E+  FYLN I         N  ++S  + Y+Y
Sbjct: 757  Y---DVTTSSIFENTFTSGDYAIYINSSEENRFYLNNIDGLLNNGTDNYFVSSETITYSY 813

Query: 160  GGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEEESFIRAFDIYPLIKTPENYKILKVLY 219
             G  YT  LGNY+VGY  ++   +G+                    I TP          
Sbjct: 814  NGKSYTSILGNYWVGYDESDTNGDGI--------------------IDTPYTLNGTNDTK 853

Query: 220  PESDSENGVVVADIFALANYPENYVIKETPVTTPSPSHSSSG-GRSYDSDISNDIESKVI 278
            P +D  N   +           NYV         +PS SS G GRSYDSDIS++IESKVI
Sbjct: 854  PLADMWNDGEIG----------NYV---------APSRSSGGSGRSYDSDISDEIESKVI 894

Query: 279  KNFVSSAAVIYGNEIDQQYAEELRERIQNAEGFKISGNSVIVGGPNANGFAKEYNNQFEM 338
            KNFVSSA V++GN ID+QYA +LRER+ +A G+ ISGN+VIVGGPNANGFAKEYN+QFEM
Sbjct: 895  KNFVSSATVLFGNGIDEQYAVQLRERVTDANGYTISGNAVIVGGPNANGFAKEYNDQFEM 954

Query: 339  PISNDYPGENKGVIQVLKVHGSSINIIQSYTIVYIAGSDRLGTQAALEYFKTLDELPNGP 398
            PISNDYPGEN+G+IQV+ +  +S  II+SYTIVYIAGSDRLGTQAALEYFKTLDELP GP
Sbjct: 955  PISNDYPGENRGIIQVMDIQDNSGTIIRSYTIVYIAGSDRLGTQAALEYFKTLDELPEGP 1014

Query: 399  IMVEWTENGPVVVE 412
            IM+EWT NGPVVVE
Sbjct: 1015 IMIEWTANGPVVVE 1028



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 66/286 (23%), Positives = 104/286 (36%), Gaps = 53/286 (18%)

Query: 54  NVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIK 113
           NV LD N     +N +  + +    N    + N+ +KN+N  NWS    I  +V + TI+
Sbjct: 43  NVTLDCNEMSFTTNTTNSSILVYAYN----SSNIVVKNMNA-NWSKDTIIFENVNDSTIE 97

Query: 114 NCEFENNEYFLKSYATEQYFYLNTIHENQEVMSNSPLASPKLVYNYG----GNEYTYRLG 169
           N E            TE Y                   S KL  +YG    GN+ T   G
Sbjct: 98  NSEI----------ITEGY-------------------SIKLEDSYGATISGNDITVANG 128

Query: 170 NYYVGYTGTEAEDEGVYNFVHNEEESFIRAFDIYPLIKTPENYKILKVLYPESDSENGVV 229
            YY  Y     E+  ++    N   +      IY +     +      +   +D     +
Sbjct: 129 EYYGIYVDGNLENGTIFGNTINVTNN-NNVCGIYTVSNITNSVISGNTITVNTDRNAYAI 187

Query: 230 VADIFALANYPENYVIKETPVTTPSPSHSSSGGRSYDSDISNDIESKVIKNFVSSAAVIY 289
            AD + + +  EN VI    V        + G  +YD DI N   + +  N +++ A  +
Sbjct: 188 CADEYIVDSTIENNVI--DLVAGDDGYTEALGISAYDEDILN---TTISGNNITAEAYWW 242

Query: 290 GNEIDQQYA--EELRERIQNAEGFKISGNSVIVGGPNANGFAKEYN 333
              ID  Y    E+   + N       GN  +     A+G   +YN
Sbjct: 243 ACGIDAYYVMYSEIENNVINVTA---RGNDEVY----ADGIYADYN 281



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 38  SEDMLVNYYGIQITAS-NVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLNIEN 96
           + +++   Y I++  S    + GN+  +   N E  GIY+  N EN T      N+   N
Sbjct: 98  NSEIITEGYSIKLEDSYGATISGND--ITVANGEYYGIYVDGNLENGTIFGNTINVTNNN 155

Query: 97  WSIGIKIDGDVKNITIK-NCEFENNEYFLKSYATEQYFYLNTIHEN 141
              GI    ++ N  I  N    N +    +   ++Y   +TI  N
Sbjct: 156 NVCGIYTVSNITNSVISGNTITVNTDRNAYAICADEYIVDSTIENN 201