Pairwise Alignments
Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2
Subject, 1273 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ
Score = 300 bits (767), Expect = 2e-85
Identities = 184/379 (48%), Positives = 224/379 (59%), Gaps = 59/379 (15%)
Query: 50 ITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDG---D 106
I +SN V + +++ I + EG G Y T+ N + GI++D D
Sbjct: 938 IISSNTVTN-SSDYAIDFDGEGEGAY-----------ATVFNNTVLASEYGIRLDDCDED 985
Query: 107 VKNITIKNCEFENNEYFLKSYATEQYFYLNTIHENQ----------EVMSNSPLASPKLV 156
NI+ + T YLN E NS L+ K+
Sbjct: 986 YSNISYNTVYSSEYPLIIGDEVTGCNIYLNNFIYTDTVNISGITPGETGKNSFLSPFKIE 1045
Query: 157 YNYGGNEYTYRLGNYYVGYTGTEAEDEGV---YNFVHNEEESFIRAFDIYPLIKTPENYK 213
Y Y GN Y+ LGNY+ Y+GT+A+ G+ Y ++ES D PLI
Sbjct: 1046 YKYNGNSYSNFLGNYWSDYSGTDADANGIGDTYYLYGCDDESDYLENDTAPLI------- 1098
Query: 214 ILKVLYPESDSENGVVVADIFALANYPENYVIKETPVTTPSPSHSSSGGRSYDSDISNDI 273
G+ D+ I TPVTT + S GGRSYDSDIS++I
Sbjct: 1099 -------------GMWGIDL-----------IPYTPVTTHTTRSSGGGGRSYDSDISDEI 1134
Query: 274 ESKVIKNFVSSAAVIYGNEIDQQYAEELRERIQNAEGFKISGNSVIVGGPNANGFAKEYN 333
+SKVIKNFVSSA V++GNEIDQQ+AEELRERIQNAEGFKISGN+VIVGGP AN FA+EYN
Sbjct: 1135 DSKVIKNFVSSATVLFGNEIDQQFAEELRERIQNAEGFKISGNAVIVGGPKANPFAREYN 1194
Query: 334 NQFEMPISNDYPGENKGVIQVLKVHGSSINIIQSYTIVYIAGSDRLGTQAALEYFKTLDE 393
+QFEMPISNDYPGENKGVIQV+ + +S I++SYTIVYIAGSDRLGTQAALEYFKTLDE
Sbjct: 1195 DQFEMPISNDYPGENKGVIQVMTIQDNSGKIVKSYTIVYIAGSDRLGTQAALEYFKTLDE 1254
Query: 394 LPNGPIMVEWTENGPVVVE 412
LP+GPIMVEWT NGPVVVE
Sbjct: 1255 LPDGPIMVEWTANGPVVVE 1273
Score = 56.2 bits (134), Expect = 5e-12
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 14/159 (8%)
Query: 48 IQITASNVVL-----DGNNNKLISN-----NSEGTGIYIRS---NYENYTENVTIKNLNI 94
I +T +N + D NNN++ N S+ GIY+ NYE Y N+T+
Sbjct: 518 IDVTGNNSYILGFNSDFNNNEIYGNILSSLGSQAFGIYLSGDSGNYEFYDNNITVAGEGS 577
Query: 95 ENWSIGIKIDGDVKNITIKNCEFENNEYFLKSYATEQYFYLNTIHEN-QEVMSNSPLASP 153
E + + G NI N E + + FY N I +N ++S
Sbjct: 578 EAIKLSYWLSGPNSNIYRNNITSEQSYAIDIIHCQGVRFYQNNIDGLINNGTNNYFVSSE 637
Query: 154 KLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNE 192
+ Y Y GN Y+ LGNY+ GY + +G+ + + E
Sbjct: 638 NITYYYNGNPYSGVLGNYWAGYLEADTNGDGIIDTPYTE 676
Score = 38.1 bits (87), Expect = 2e-06
Identities = 29/68 (42%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 29 INESGTYTLSEDMLVN---YYGIQITASNVVLDGNNNKLISNNSEGTGIYI-RSNYENYT 84
I G Y L D + + Y I I + NV DGNN+ L TG Y+ SN EN
Sbjct: 730 ITTPGYYILDCDYVNDSSIYKFIVIESDNVTFDGNNHWL-----NKTGDYVVYSNTENML 784
Query: 85 ENVTIKNL 92
ENVT+KNL
Sbjct: 785 ENVTVKNL 792
Score = 26.2 bits (56), Expect = 0.006
Identities = 73/318 (22%), Positives = 114/318 (35%), Gaps = 44/318 (13%)
Query: 32 SGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIK- 90
S T T S + Y + + S GNN I+ NS I SN Y ++ TI
Sbjct: 296 STTITSSAAAIGIYSELDMLTST--FSGNN---ITANSNHYSAGISSN--RYVQDTTISG 348
Query: 91 ---NLNIENWSIGIKIDGDVKNITIKNCEFENNEYFLKSYATEQY---FYLNTIHENQEV 144
N N + SI I ++ D+ N I E +Y + +TI EN +
Sbjct: 349 NTINTNATHNSIDICVNRDLTNTNISENEITAISEAYNAYGIYTFGGKILTSTILEN-NI 407
Query: 145 MSNSPLASPKLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEEESFI------- 197
+NS ++ G + T GN T + G+Y + ++ + I
Sbjct: 408 TANSSTYDAYGIFADGYLQDTTISGNTI--NTNAVDDSTGIYVYDYSIVNTDILENAITA 465
Query: 198 ----RAFDIYPLIKTPENYKILKVLYPESDSENGVVVADIFALANYPENYVIKETPVTTP 253
+A+ +Y ENY I N + D A Y Y T
Sbjct: 466 ISGNKAYGVY-----TENYHIQDTTI---SGNNITITGDTNARGIYSSYYF---TGSIIS 514
Query: 254 SPSHSSSGGRSY----DSDI-SNDIESKVIKNFVSSAAVIYGNEIDQQYAEELRERIQNA 308
+ + +G SY +SD +N+I ++ + S A IY + Y
Sbjct: 515 NNTIDVTGNNSYILGFNSDFNNNEIYGNILSSLGSQAFGIYLSGDSGNYEFYDNNITVAG 574
Query: 309 EGFKISGNSVIVGGPNAN 326
EG + S + GPN+N
Sbjct: 575 EGSEAIKLSYWLSGPNSN 592