Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 925 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score = 58.9 bits (141), Expect = 6e-13
 Identities = 90/393 (22%), Positives = 151/393 (38%), Gaps = 82/393 (20%)

Query: 2   KKFLILAIIALSMLVSANATDIQYNWT----------------------INESGTYTLSE 39
           K FL++ I+     V A  T I  N T                      + E+G   ++ 
Sbjct: 5   KVFLVMVILGAISGVCAEDTTIYVNNTHYWYQSGAFFESNNSIQDAIENVPENGIVEVTT 64

Query: 40  DMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLNIENWSI 99
           D+ V+  GI+I  SN+++D   NKL S N EG GI I  N      NV++KN  + N+  
Sbjct: 65  DLKVSN-GIEINKSNIIIDLKGNKL-SGNYEGRGISISGN------NVSLKNGIVSNFDY 116

Query: 100 GIKIDGDVKNITIKNCEFENNEYFLKSY-------ATEQYFYLNTIHENQEV-MSNSPLA 151
           GI ++        +NC+  NNE F  +Y       +       N ++EN  + +  S + 
Sbjct: 117 GIVLE------NAENCKISNNEVFGNTYDGIYILNSKNNDISENLVYENGVIGIVTSGIF 170

Query: 152 SPKLVYN-----------YGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEEESFIRAF 200
                +N           Y G E      N   G T  E ED GV  FV + + + I   
Sbjct: 171 LDGSEFNNITKNTVNNNIYNGIELLNSKNNLISGNTVFENEDNGV--FVWDSKNNSIIFN 228

Query: 201 DIYPLIKTPENYKILKVLYPESDSENGVVVADIFALANYPENYVIKETPVTTPSPSHSSS 260
           ++Y   +   N  + +     +   N +   D   + ++       E  ++    S +S 
Sbjct: 229 ELY---QNENNGILTRESEFNNIESNNIFENDDSGIYSWKS----FENTISKNKISKNSE 281

Query: 261 GGRSYDSDIS--------NDIESKVIKNFVSSAAVIYGNEIDQQYAEELRERIQNAEGFK 312
           G   ++SD++        N+++S +   F +    IY N  +        +  +N     
Sbjct: 282 GIILWNSDLNVLFKNRLLNNVKSGIFMEFGTKYNTIYDNLFNNSLNVRFEDSGENYWNAP 341

Query: 313 ISGNSVIVGG----------PNANGFAKEYNNQ 335
           I   S I+ G          P   GF+++  NQ
Sbjct: 342 IINESNILEGEFTAGNVWYTPEGTGFSQKAMNQ 374