Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 688 a.a., hypothetical protein from Methanococcus maripaludis JJ

 Score =  204 bits (519), Expect = 7e-57
 Identities = 135/352 (38%), Positives = 192/352 (54%), Gaps = 47/352 (13%)

Query: 66  SNNSEGTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENNEYFLK 125
           S N+ G G Y   N+ N TE   I    I  +S       D++ I   N    N     K
Sbjct: 379 SLNTTGKGYYF-VNFSNGTETSIISEFGIIKYSSY----PDIEEINTLNSYACNKSVVFK 433

Query: 126 SYATEQYFYLNT---IHENQEVMSNSPLASPKLVYN--YGGNEYTYRLGNYYVGYTGTEA 180
            Y+      +N+   + EN+ ++S     S + V N  +G N Y +   N Y    GT  
Sbjct: 434 FYSKTAPEIINSSVNVLENEVIVS----ISAEDVENDLWGVNVY-FDGSNEYYSLNGTN- 487

Query: 181 EDEGVYNFVHNEEESFIRAFDIYPLIKTPENYKILKVLYPESDSENGVVVADIFALANYP 240
                        E+F  +FD   +    E+Y I +      +  N  +VA         
Sbjct: 488 -------------ETFNGSFD-KSMFSYGEHYAIFEAFDGSGNVNNSEMVA--------- 524

Query: 241 ENYVIKETPVTTPSPSHSSSGGRSYDSDISNDIESKVIKNFVSSAAVIYGNEIDQQYAEE 300
                    ++ P+ S S S G  Y SD+S+ I S  IK  VS++ +IYG+++D+ YA  
Sbjct: 525 -------FEISAPATS-SRSTGNHYSSDLSDGISSGTIKRAVSNSNIIYGSDVDEGYALN 576

Query: 301 LRERIQNAEGFKISGNSVIVGGPNANGFAKEYNNQFEMPISNDYPGENKGVIQVLKVHGS 360
           LRE ++N   +++SG+++IVGGP ANGFA++Y+++FE+ I+NDYPGENKG+IQV  +   
Sbjct: 577 LRENVKNGNDYELSGDTIIVGGPEANGFAEKYDSEFEISITNDYPGENKGLIQVKNIEVR 636

Query: 361 SINIIQSYTIVYIAGSDRLGTQAALEYFKTLDELPNGPIMVEWTENGPVVVE 412
             NII++Y ++YIAGSDR GTQAALEYFKTLDELP+ P+ VEWTENGPVVVE
Sbjct: 637 DGNIIKTYQVIYIAGSDRFGTQAALEYFKTLDELPDMPLTVEWTENGPVVVE 688