Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 1050 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  300 bits (768), Expect = 1e-85
 Identities = 188/399 (47%), Positives = 243/399 (60%), Gaps = 53/399 (13%)

Query: 15   LVSANATDIQYNWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGI 74
            L+S+N       + I+ +G Y    D     +   + AS V                 GI
Sbjct: 704  LISSNTVINASYYAIDPNGDYDYGIDAYATVFNNTVLASKV-----------------GI 746

Query: 75   YIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNITIKNCEFENNEYFLKSYATEQYFY 134
            ++ +  E Y+ N+T   +  +++ I   I GD  NIT   C    N +     +T+    
Sbjct: 747  WLDNYCEGYS-NITQNTVYADDYPI---IIGD--NIT--GCNIYLNNFIHTGNSTD---- 794

Query: 135  LNTIHENQEVMSNSPLASP-KLVYNYGGNEYTYRLGNYYVGYTGTEAEDEGVYNFVHNEE 193
            ++ I  N  V  N+ L SP ++ YNY GN Y+  LGNY+  Y+GT+ +  G+ +  +   
Sbjct: 795  ISGIMPNTTV--NNSLVSPFEIEYNYNGNTYSNILGNYWSDYSGTDTDGNGIGDTYYIYG 852

Query: 194  ESFIRAFDIYPLIKTPENYKILKVLYPESDSENGVVVADIFALANYPENYVIKETPVTTP 253
              + R +         E+Y    + Y E+D+   + + +   + NY              
Sbjct: 853  CDYERTYG--------EDY--YDIDYLENDTAPLIDMWNGNEIGNY-----------VAT 891

Query: 254  SPSHSSSGGRSYDSDISNDIESKVIKNFVSSAAVIYGNEIDQQYAEELRERIQNAEGFKI 313
            S S   SGGRSYDSDIS++IESKVIKNFVSSA+VIYGNEIDQQYAEELRE+IQNA G+KI
Sbjct: 892  SRSSGGSGGRSYDSDISDEIESKVIKNFVSSASVIYGNEIDQQYAEELREKIQNANGYKI 951

Query: 314  SGNSVIVGGPNANGFAKEYNNQFEMPISNDYPGENKGVIQVLKVHGSSINIIQSYTIVYI 373
            SGN+VIVGGP +NGFA+EYN+QFEMPISNDYPGENKG+IQVLKV  ++  I+QSYTIVYI
Sbjct: 952  SGNAVIVGGPLSNGFAREYNDQFEMPISNDYPGENKGIIQVLKVQDNTGKIVQSYTIVYI 1011

Query: 374  AGSDRLGTQAALEYFKTLDELPNGPIMVEWTENGPVVVE 412
            AGSDRLGTQAALEYFKTLDELP GPIMVEWTENG  VVE
Sbjct: 1012 AGSDRLGTQAALEYFKTLDELPEGPIMVEWTENGHKVVE 1050



 Score = 52.8 bits (125), Expect = 5e-11
 Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 68/278 (24%)

Query: 34  TYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLN 93
           T+ +SE  LV  YGI        LD +N  +  N  EG  I +     N+T +   KN+ 
Sbjct: 309 TFKVSESSLV--YGIS------ALDVDNITISKNKFEG--IAVPGYGVNFTNSRIFKNI- 357

Query: 94  IENWSIGIKIDGDVKNITIKNCEFENNEYFLKSYATEQYFYLNTIHE-------NQEVMS 146
                         +N+++    F+ N        +  Y YLN           N+ +  
Sbjct: 358 -------------FENVSLAPLAFDYN-------CSGTYVYLNNFINCSWNRGINESITL 397

Query: 147 NSPLASPKLVYNYGGNEYTYRLGNYYVGYTGTEAE-DEGVYNFVHNEEESFIRAFDIYPL 205
           NSPL    + Y Y G  Y+   GNY+  Y  T A  +EG+++  +   +S     D YPL
Sbjct: 398 NSPL---NVSYTYNGTTYSTIAGNYWSDYNETNANVNEGIWSIPYIITDS---VNDSYPL 451

Query: 206 IK---TPENYKILKVLYPESDSENGVVVADIFALANYPENYVIKE------------TPV 250
            K     +   I+ +   + DSENG V+         P  YV+ E            + V
Sbjct: 452 AKPFSMVDENGIIHITLDDVDSENGYVITK-------PGTYVLDENITNGGSILIDSSNV 504

Query: 251 TTPSPSHSSSGGRSYDSDISNDI-ESKVIKNFVSSAAV 287
           T     H  +   SY    + ++ E+  +KN ++ +++
Sbjct: 505 TFDGNGHFITNSESYAVYSNTEMFENVTVKNVITLSSI 542



 Score = 39.7 bits (91), Expect = 4e-07
 Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 17/99 (17%)

Query: 5  LILAIIALSMLVSANATDIQYNWT---------INESGTYTLSEDMLVNYYGIQITASNV 55
          ++  +I+    VSA    I YN           I+E G Y L+ED + N  GI+I + NV
Sbjct: 1  MLTILISFIGFVSAETVPIDYNINNSNYDTAKMISEPGIYNLTED-ITNLGGIEINSDNV 59

Query: 56 VLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLNI 94
           L+G    L  N +   GI    +     +N+TI N+N+
Sbjct: 60 TLNGQGYFL--NVTSNNGIQASGH-----KNITITNVNL 91



 Score = 30.0 bits (66), Expect = 3e-04
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 14/88 (15%)

Query: 29  INE-SGTYTLSEDMLV-NYYGIQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTEN 86
           INE S   T+S + +   Y GI+I  +N V+ GN    I+N     GI I +N      N
Sbjct: 125 INENSENITISGNTITAGYNGIEIDGNNSVITGNT---ITNLLNYWGISIGAN------N 175

Query: 87  VTIKNLNIENWSIGIKIDGDVKNITIKN 114
             + N N+ N +  I +DG   N+T++N
Sbjct: 176 CLVAN-NVINSNYSINMDG--YNLTVEN 200