Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 1112 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  321 bits (822), Expect = 8e-92
 Identities = 207/413 (50%), Positives = 251/413 (60%), Gaps = 61/413 (14%)

Query: 16   VSANATDIQYNWTINESGTYTLSEDMLVNYYGIQITASNVVLDGNNNKLISNNSEGTGIY 75
            +S+N  D  + WT    G YTL              +SN V++ + +  I  N      Y
Sbjct: 745  ISSNTVD-DHIWTC---GQYTL-------------ISSNTVINASRDYAIDPNG-----Y 782

Query: 76   IRSNYENYTENVTIKNLNIENWSIGIKIDG---DVKNITIKNCEFENNEYFLKSYATEQY 132
                   Y    TI N  I   +IGI +D    D  NIT      ++    +    T   
Sbjct: 783  PDLGINAYA---TIFNNTIRASTIGILLDNCCEDYSNITQNTIYADDYPIIIGDNITGCN 839

Query: 133  FYLNTI------HENQEVMSNSP----LASP-KLVYNYGGNEYTYRLGNYYVGYTGTEAE 181
             YLN            E+M N+     L SP ++ Y Y GN Y+  LGNY+  Y+GT+A+
Sbjct: 840  IYLNNFIYTGNSSNISEIMPNTTVNNSLVSPFEIEYKYNGNNYSNILGNYWSDYSGTDAD 899

Query: 182  DEGVYNFVHNEEESFIRAFDIYPLIKTPENYKILKVLYPESDSENGVVVADIFALANYPE 241
              G+ +  +     + R +         E Y  ++  Y E+D+      A +  + N  E
Sbjct: 900  SNGIGDTPYLYGCDYERTYG--------EEYYDIE--YLENDT------APLIDMWNGNE 943

Query: 242  --NYVIKETPVTTPSPSHSSSGGRSYDSDISNDIESKVIKNFVSSAAVIYGNEIDQQYAE 299
              NYV      TTPS SHSSSGGRSYDSDIS++IESKVIKNFVSSAAVIYGNEIDQ++AE
Sbjct: 944  IGNYVAP----TTPSSSHSSSGGRSYDSDISDEIESKVIKNFVSSAAVIYGNEIDQKFAE 999

Query: 300  ELRERIQNAEGFKISGNSVIVGGPNANGFAKEYNNQFEMPISNDYPGENKGVIQVLKVHG 359
            ELRERIQNA G+KISGN+VIVGGPNANGFAKEYN+QFEMPISNDYPGENKG+IQVLKV  
Sbjct: 1000 ELRERIQNANGYKISGNAVIVGGPNANGFAKEYNDQFEMPISNDYPGENKGIIQVLKVQD 1059

Query: 360  SSINIIQSYTIVYIAGSDRLGTQAALEYFKTLDELPNGPIMVEWTENGPVVVE 412
            ++  I+QSYTIVYIAGSDRLGTQAALEYFKTLDELP GPIMVEWTENGP VVE
Sbjct: 1060 NTGKIVQSYTIVYIAGSDRLGTQAALEYFKTLDELPEGPIMVEWTENGPKVVE 1112



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 48/154 (31%), Positives = 65/154 (42%), Gaps = 29/154 (18%)

Query: 1   MKKFLILAIIALSMLVSANATDIQYN---------------WTINESGTYTLSEDMLVNY 45
           M K  +L ++ L  L S NA DI Y+                 INESG Y ++ D   N 
Sbjct: 1   MIKKCLLFLLLLFALGSVNAVDIDYSNPTDVNIDGTDYHVFALINESGDYKVTVDFENNT 60

Query: 46  YG------IQITASNVVLDGNNNKLISNNSEGTGIYIRSNYENYTENVTIKNLNIENWSI 99
                   I     NVVLD NN    +N +    I     Y   + N+T+KNLN  NWS 
Sbjct: 61  LSSNDSVLIIKDTENVVLDCNNMFFSTNTTNSPYII----YAYNSSNITVKNLN-ANWSS 115

Query: 100 GIKIDGDVKNITIKNCEFENNEYFL---KSYATE 130
                 DV   T++N E  +  Y +   +SY T+
Sbjct: 116 DTIFVKDVNEFTLENSEIISEGYSIELQESYGTK 149