Pairwise Alignments

Query, 412 a.a., hypothetical protein from Methanococcus maripaludis S2

Subject, 416 a.a., right-handed parallel beta-helix repeat-containing protein from Methanococcus maripaludis JJ

 Score =  535 bits (1378), Expect = e-156
 Identities = 286/423 (67%), Positives = 326/423 (77%), Gaps = 18/423 (4%)

Query: 1   MKKFLILAIIALSMLVSANA----TDIQYNWTINESGTYTLSEDMLV-NYYGIQITASNV 55
           MK+ LILAIIALSMLVS +A     +  Y   INE GTY LSED++   + GI I  SNV
Sbjct: 1   MKRLLILAIIALSMLVSVSAEMDYNNSDYYGVINEPGTYVLSEDIISPKWGGILINTSNV 60

Query: 56  VLDGNNNKLISNNSE----GTGIYIRSNYENYTENVTIKNLNIENWSIGIKIDGDVKNIT 111
           VLDG+N+ +I NN      G  IY   +     EN+TIKN   +NW+  I  D D KN+T
Sbjct: 61  VLDGDNHHIICNNGSEETYGVDIYPDGHP---IENITIKNAVFKNWTSAIYSDDDSKNVT 117

Query: 112 IKNCEFENNEYFLKSYATEQYFYLNTIHENQEVMSNSPLASPKLVYNYGGNEYTYRLGNY 171
           I+NCEFENN YFL SY  E YFYLNTIHENQ   S +PLASPKLVY YGG EYTYRLGNY
Sbjct: 118 IRNCEFENNTYFLDSYGIEIYFYLNTIHENQSAESYAPLASPKLVYTYGGTEYTYRLGNY 177

Query: 172 YVGYTGTEAEDEGVYNFVHNEEESFIRAFDIYPLIKTPENYKILKVLYPESDSE-NGVVV 230
           Y GY GT+ EDEGVY+ V+  + +     D+Y LIKTPENY I + LYPE DSE  G ++
Sbjct: 178 YYGYEGTDTEDEGVYSGVYELDSTT----DLYALIKTPENYIITETLYPEVDSEYGGALI 233

Query: 231 ADIFALANYPENYVIKETPVTTPSP-SHSSSGGRSYDSDISNDIESKVIKNFVSSAAVIY 289
           ADIFAL N PENYVI + PVTT +  S  SSGGRSYDSDIS++I+SKVIKNFVSSAAVI+
Sbjct: 234 ADIFALTNDPENYVITDAPVTTTTTRSSGSSGGRSYDSDISDEIDSKVIKNFVSSAAVIF 293

Query: 290 GNEIDQQYAEELRERIQNAEGFKISGNSVIVGGPNANGFAKEYNNQFEMPISNDYPGENK 349
           GNEIDQQYAEELRERIQNAE +KISGN+VIVGGP +NGFA+EYN+QFEMPISNDYPGENK
Sbjct: 294 GNEIDQQYAEELRERIQNAENYKISGNAVIVGGPLSNGFAREYNDQFEMPISNDYPGENK 353

Query: 350 GVIQVLKVHGSSINIIQSYTIVYIAGSDRLGTQAALEYFKTLDELPNGPIMVEWTENGPV 409
           GVIQVLK+  +S  I++SYTIVYIAGSDRLGTQAALEYFKTLDELP GPIMVEWTENG  
Sbjct: 354 GVIQVLKIQDNSGKIVKSYTIVYIAGSDRLGTQAALEYFKTLDELPEGPIMVEWTENGHK 413

Query: 410 VVE 412
           VVE
Sbjct: 414 VVE 416